[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
826	8118007	NM_001517	GTF2H4		general transcription factor IIH, polypeptide 4, 52kDa
827	8177885	NM_001517	GTF2H4		general transcription factor IIH, polypeptide 4, 52kDa
828	8179205	NM_001517	GTF2H4		general transcription factor IIH, polypeptide 4, 52kDa
2853	8118023	NM_001517	GTF2H4		general transcription factor IIH, polypeptide 4, 52kDa

Fetching correlation data, please wait...
Getting list of correlations for id 826.
Getting list of p-values for id 826.
1 of 4 done.
Getting list of correlations for id 827.
Getting list of p-values for id 827.
2 of 4 done.
Getting list of correlations for id 828.
Getting list of p-values for id 828.
3 of 4 done.
Getting list of correlations for id 2853.
Getting list of p-values for id 2853.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.303 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8177885	8179205	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8118007	8177885	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118007	8179205	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8177885	8118007	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179205	8177885	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8179205	8118007	NM_001517	GTF2H4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8118007	8118395	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	5.940444e-7
8	8177885	8118395	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	5.197889e-7
9	8177885	8178164	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	4.620346e-7
10	8118007	8178164	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	4.158311e-7
11	8179205	8118395	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	3.780283e-7
12	8179205	8178164	NR_026717	STK19	0.584321	5.999756e-11	4.158311e-6	3.465259e-7
13	8118007	7941732	NM_005133	RCE1	0.568560	2.501042e-10	1.733422e-5	1.333402e-6
14	8179205	7941732	NM_005133	RCE1	0.568560	2.501042e-10	1.733422e-5	1.238159e-6
15	8177885	7941732	NM_005133	RCE1	0.568560	2.501042e-10	1.733422e-5	1.155615e-6
16	8177885	8035271	NM_024527	ABHD8	0.556630	7.016454e-10	4.862964e-5	3.039353e-6
17	8179205	8035271	NM_024527	ABHD8	0.556630	7.016454e-10	4.862964e-5	2.860567e-6
18	8118007	8035271	NM_024527	ABHD8	0.556630	7.016454e-10	4.862964e-5	2.701647e-6
19	8177885	8105191	NM_024615	PARP8	-0.554746	8.227649e-10	5.702419e-5	3.001273e-6
20	8118007	8105191	NM_024615	PARP8	-0.554746	8.227649e-10	5.702419e-5	2.851209e-6
21	8179205	8105191	NM_024615	PARP8	-0.554746	8.227649e-10	5.702419e-5	2.715438e-6
22	8179205	8052024	NM_025133	FBXO11	-0.551385	1.090355e-9	7.557035e-5	3.435016e-6
23	8177885	8052024	NM_025133	FBXO11	-0.551385	1.090355e-9	7.557035e-5	3.285667e-6
24	8118007	8052024	NM_025133	FBXO11	-0.551385	1.090355e-9	7.557035e-5	3.148764e-6
25	8177885	8049532	NM_001137550	LRRFIP1	-0.549882	1.235407e-9	8.562362e-5	3.424945e-6
26	8179205	8049532	NM_001137550	LRRFIP1	-0.549882	1.235407e-9	8.562362e-5	3.293216e-6
27	8118007	8049532	NM_001137550	LRRFIP1	-0.549882	1.235407e-9	8.562362e-5	3.171245e-6
28	8177885	8083094	NM_006506	RASA2	-0.549785	1.245369e-9	8.631403e-5	3.082644e-6
29	8118007	8083094	NM_006506	RASA2	-0.549785	1.245369e-9	8.631403e-5	2.976346e-6
30	8179205	8083094	NM_006506	RASA2	-0.549785	1.245369e-9	8.631403e-5	2.877134e-6
31	8179205	8106354	NM_006633	IQGAP2	-0.548435	1.392511e-9	9.651218e-5	3.113296e-6
32	8118007	8106354	NM_006633	IQGAP2	-0.548435	1.392511e-9	9.651218e-5	3.016006e-6
33	8177885	8106354	NM_006633	IQGAP2	-0.548435	1.392511e-9	9.651218e-5	2.924612e-6
34	8118007	8084219	NM_017644	KLHL24	-0.548095	1.432051e-9	9.925258e-5	2.919193e-6
35	8179205	8084219	NM_017644	KLHL24	-0.548095	1.432051e-9	9.925258e-5	2.835788e-6
36	8177885	8084219	NM_017644	KLHL24	-0.548095	1.432051e-9	9.925258e-5	2.757016e-6
37	8179205	8068551	NM_101395	DYRK1A	-0.546683	1.608291e-9	1.114674e-4	3.012633e-6
38	8177885	8068551	NM_101395	DYRK1A	-0.546683	1.608291e-9	1.114674e-4	2.933353e-6
39	8118007	8068551	NM_101395	DYRK1A	-0.546683	1.608291e-9	1.114674e-4	2.858139e-6
40	8118007	8039791	NM_032792	ZBTB45	0.545500	1.771941e-9	1.228097e-4	3.070242e-6
41	8179205	8039791	NM_032792	ZBTB45	0.545500	1.771941e-9	1.228097e-4	2.995358e-6
42	8177885	8039791	NM_032792	ZBTB45	0.545500	1.771941e-9	1.228097e-4	2.924040e-6
43	8179205	8018511	NM_032478	MRPL38	0.543971	2.007166e-9	1.391127e-4	3.235178e-6
44	8177885	8018511	NM_032478	MRPL38	0.543971	2.007166e-9	1.391127e-4	3.161652e-6
45	8118007	8018511	NM_032478	MRPL38	0.543971	2.007166e-9	1.391127e-4	3.091393e-6
46	8179205	8162147	NM_024617	ZCCHC6	-0.542943	2.181839e-9	1.512189e-4	3.287368e-6
47	8177885	8162147	NM_024617	ZCCHC6	-0.542943	2.181839e-9	1.512189e-4	3.217424e-6
48	8118007	8162147	NM_024617	ZCCHC6	-0.542943	2.181839e-9	1.512189e-4	3.150394e-6
49	8179205	7983744	NM_014547	TMOD3	-0.541793	2.394371e-9	1.659491e-4	3.386715e-6
50	8177885	7983744	NM_014547	TMOD3	-0.541793	2.394371e-9	1.659491e-4	3.318981e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation