[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 4471.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4471	8118395	NR_026717	STK19		serine/threonine kinase 19

Fetching correlation data, please wait...
Getting list of correlations for id 4471.
Getting list of p-values for id 4471.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.085 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118395	8178164	NR_026717	STK19	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8118395	8179391	NR_026717	STK19	0.907549	1.332640e-40	2.309066e-36	1.154533e-36
3	8118395	8171119	NM_004192	ASMTL	0.616520	2.527541e-12	4.379470e-8	1.459823e-8
4	8118395	8177011	NM_004192	ASMTL	0.611519	4.232220e-12	7.333168e-8	1.833292e-8
5	8118395	7898377	NM_014675	CROCC	0.595287	2.122236e-11	3.677199e-7	7.354398e-8
6	8118395	8177885	NM_001517	GTF2H4	0.584321	5.999756e-11	1.039578e-6	1.732630e-7
7	8118395	8179205	NM_001517	GTF2H4	0.584321	5.999756e-11	1.039578e-6	1.485111e-7
8	8118395	8118007	NM_001517	GTF2H4	0.584321	5.999756e-11	1.039578e-6	1.299472e-7
9	8118395	7984408	NM_145160	MAP2K5	-0.581643	7.687910e-11	1.332084e-6	1.480093e-7
10	8118395	8006542	NM_001030006	AP2B1	-0.574844	1.428444e-10	2.475064e-6	2.475064e-7
11	8118395	8146906			0.574468	1.477687e-10	2.560389e-6	2.327626e-7
12	8118395	8002481	NM_032821	HYDIN	0.567689	2.700426e-10	4.679027e-6	3.899189e-7
13	8118395	8009913	NR_003587	MYO15B	0.567569	2.729017e-10	4.728568e-6	3.637360e-7
14	8118395	7947540	NM_145803	TRAF6	-0.566060	3.115280e-10	5.397845e-6	3.855603e-7
15	8118395	8001946	NM_001040715	KIAA0895L	0.549429	1.282692e-9	2.222521e-5	1.481681e-6
16	8118395	8162216	NM_016848	SHC3	0.549369	1.289048e-9	2.233534e-5	1.395958e-6
17	8118395	7983663	NM_005154	USP8	-0.546236	1.668401e-9	2.890838e-5	1.700493e-6
18	8118395	7898809	NM_017449	EPHB2	0.543348	2.111223e-9	3.658116e-5	2.032286e-6
19	8118395	8138865	NM_001883	CRHR2	0.542229	2.311494e-9	4.005126e-5	2.107961e-6
20	8118395	8084219	NM_017644	KLHL24	-0.541751	2.402661e-9	4.163090e-5	2.081545e-6
21	8118395	7950420	NM_001144869	LIPT2	0.540928	2.567407e-9	4.448545e-5	2.118355e-6
22	8118395	8075921	NM_052906	ELFN2	0.539514	2.876132e-9	4.983474e-5	2.265215e-6
23	8118395	7985226	NM_206839	MORF4L1	-0.537892	3.274155e-9	5.673129e-5	2.466578e-6
24	8118395	7998072	NM_207514	DEF8	0.532094	5.175410e-9	8.967433e-5	3.736430e-6
25	8118395	8108822	NM_173828	RELL2	0.529834	6.171782e-9	1.069385e-4	4.277539e-6
26	8118395	8010629	NM_199287	CCDC137	0.529664	6.254009e-9	1.083632e-4	4.167816e-6
27	8118395	8165934	NM_001649	SHROOM2	0.527973	7.128041e-9	1.235076e-4	4.574354e-6
28	8118395	8123259	NM_000301	PLG	0.527640	7.313861e-9	1.267273e-4	4.525974e-6
29	8118395	7947609	NM_004813	PEX16	0.527431	7.432254e-9	1.287787e-4	4.440644e-6
30	8118395	8029592	NM_007056	SFRS16	0.526859	7.767250e-9	1.345831e-4	4.486105e-6
31	8118395	8004556	NM_018081	WRAP53	0.525897	8.362262e-9	1.448929e-4	4.673965e-6
32	8118395	8145175	NM_176871	PDLIM2	0.524840	9.067162e-9	1.571067e-4	4.909585e-6
33	8118395	8000974	NM_024706	ZNF668	0.523897	9.742961e-9	1.688163e-4	5.115645e-6
34	8118395	8025328	NM_001159944	EVI5L	0.523037	1.040167e-8	1.802297e-4	5.300874e-6
35	8118395	8050702	NM_004881	TP53I3	0.522198	1.108498e-8	1.920694e-4	5.487696e-6
36	8118395	7918457	NM_002232	KCNA3	-0.521769	1.145100e-8	1.984115e-4	5.511431e-6
37	8118395	8026217	NM_017721	CC2D1A	0.521484	1.170083e-8	2.027402e-4	5.479466e-6
38	8118395	8024347	NM_079834	SCAMP4	0.520559	1.254620e-8	2.173881e-4	5.720739e-6
39	8118395	8090639	NM_014602	PIK3R4	-0.519630	1.345487e-8	2.331326e-4	5.977759e-6
40	8118395	8158009	NM_014580	SLC2A8	0.518808	1.431083e-8	2.479637e-4	6.199093e-6
41	8118395	8030321	NM_153329	ALDH16A1	0.518745	1.437890e-8	2.491432e-4	6.076663e-6
42	8118395	8153304	NM_145003	TSNARE1	0.518296	1.487000e-8	2.576526e-4	6.134585e-6
43	8118395	8032365	NM_031918	KLF16	0.517347	1.596228e-8	2.765784e-4	6.432056e-6
44	8118395	8158240	NM_021109	TMSB4X	-0.517014	1.636306e-8	2.835227e-4	6.443698e-6
45	8118395	7963965	NM_032345	WIBG	0.515897	1.777978e-8	3.080703e-4	6.846006e-6
46	8118395	8003332	NM_002461	MVD	0.515246	1.865980e-8	3.233183e-4	7.028658e-6
47	8118395	8033362	NM_000208	INSR	0.514526	1.968069e-8	3.410074e-4	7.255476e-6
48	8118395	7950425	NM_015424	CHRDL2	0.514291	2.002446e-8	3.469638e-4	7.228412e-6
49	8118395	8062971	NM_001048223	DBNDD2	0.514248	2.008846e-8	3.480727e-4	7.103525e-6
50	8118395	8141283	NM_015545	PTCD1	0.514192	2.017211e-8	3.495222e-4	6.990444e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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