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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
4471 8118395 NR_026717 STK19 link to infopage serine/threonine kinase 19
4472 8178164 NR_026717 STK19 link to infopage serine/threonine kinase 19
6383 8179391 NR_026717 STK19 link to infopage serine/threonine kinase 19

Fetching correlation data, please wait...
Getting list of correlations for id 4471.
Getting list of p-values for id 4471.
1 of 3 done.
Getting list of correlations for id 4472.
Getting list of p-values for id 4472.
2 of 3 done.
Getting list of correlations for id 6383.
Getting list of p-values for id 6383.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.278 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8118395 8178164 NR_026717 STK19 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8178164 8118395 NR_026717 STK19 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8179391 8178164 NR_026717 STK19 link to infopage 0.907549 1.332640e-40 6.927197e-36 2.309066e-36
4 8179391 8118395 NR_026717 STK19 link to infopage 0.907549 1.332640e-40 6.927197e-36 1.731799e-36
5 8178164 8179391 NR_026717 STK19 link to infopage 0.907549 1.332640e-40 6.927197e-36 1.385439e-36
6 8118395 8179391 NR_026717 STK19 link to infopage 0.907549 1.332640e-40 6.927197e-36 1.154533e-36
7 8179391 7898377 NM_014675 CROCC link to infopage 0.642925 1.419229e-13 7.377294e-9 1.053899e-9
8 8179391 8138865 NM_001883 CRHR2 link to infopage 0.623836 1.169399e-12 6.078654e-8 7.598317e-9
9 8118395 8171119 NM_004192 ASMTL link to infopage 0.616520 2.527541e-12 1.313841e-7 1.459823e-8
10 8178164 8171119 NM_004192 ASMTL link to infopage 0.616520 2.527541e-12 1.313841e-7 1.313841e-8
11 8118395 8177011 NM_004192 ASMTL link to infopage 0.611519 4.232220e-12 2.199951e-7 1.999955e-8
12 8178164 8177011 NM_004192 ASMTL link to infopage 0.611519 4.232220e-12 2.199951e-7 1.833292e-8
13 8179391 7918457 NM_002232 KCNA3 link to infopage -0.608233 5.909014e-12 3.071565e-7 2.362742e-8
14 8179391 8171119 NM_004192 ASMTL link to infopage 0.599779 1.370711e-11 7.125094e-7 5.089353e-8
15 8178164 7898377 NM_014675 CROCC link to infopage 0.595287 2.122236e-11 1.103160e-6 7.354398e-8
16 8118395 7898377 NM_014675 CROCC link to infopage 0.595287 2.122236e-11 1.103160e-6 6.894748e-8
17 8179391 7947540 NM_145803 TRAF6 link to infopage -0.591851 2.951289e-11 1.534110e-6 9.024175e-8
18 8179391 8162216 NM_016848 SHC3 link to infopage 0.587707 4.370960e-11 2.272068e-6 1.262260e-7
19 8179391 8010629 NM_199287 CCDC137 link to infopage 0.586068 5.097555e-11 2.649760e-6 1.394610e-7
20 8179391 7984408 NM_145160 MAP2K5 link to infopage -0.585216 5.519936e-11 2.869318e-6 1.434659e-7
21 8178164 8118007 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.485111e-7
22 8118395 8179205 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.417606e-7
23 8178164 8177885 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.355971e-7
24 8118395 8177885 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.299472e-7
25 8178164 8179205 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.247493e-7
26 8118395 8118007 NM_001517 GTF2H4 link to infopage 0.584321 5.999756e-11 3.118733e-6 1.199513e-7
27 8118395 7984408 NM_145160 MAP2K5 link to infopage -0.581643 7.687910e-11 3.996252e-6 1.480093e-7
28 8178164 7984408 NM_145160 MAP2K5 link to infopage -0.581643 7.687910e-11 3.996252e-6 1.427233e-7
29 8179391 8075921 NM_052906 ELFN2 link to infopage 0.581592 7.724119e-11 4.015074e-6 1.384508e-7
30 8179391 7977418 NM_001134875 C14orf80 link to infopage 0.581403 7.859655e-11 4.085527e-6 1.361842e-7
31 8179391 8076668 BC104183 KIAA1644 link to infopage 0.578280 1.046316e-10 5.438857e-6 1.754470e-7
32 8179391 7898809 NM_017449 EPHB2 link to infopage 0.578124 1.061324e-10 5.516871e-6 1.724022e-7
33 8179391 8028719 NM_016941 DLL3 link to infopage 0.575426 1.355383e-10 7.045415e-6 2.134974e-7
34 8118395 8006542 NM_001030006 AP2B1 link to infopage -0.574844 1.428444e-10 7.425193e-6 2.183880e-7
35 8178164 8006542 NM_001030006 AP2B1 link to infopage -0.574844 1.428444e-10 7.425193e-6 2.121484e-7
36 8178164 8146906 link to infopage 0.574468 1.477687e-10 7.681167e-6 2.133658e-7
37 8118395 8146906 link to infopage 0.574468 1.477687e-10 7.681167e-6 2.075991e-7
38 8179391 8065580 NM_080611 DUSP15 link to infopage 0.573771 1.573106e-10 8.177160e-6 2.151884e-7
39 8179391 8052932 link to infopage 0.572877 1.704413e-10 8.859710e-6 2.271721e-7
40 8179391 8024347 NM_079834 SCAMP4 link to infopage 0.572726 1.727631e-10 8.980401e-6 2.245100e-7
41 8179391 8177011 NM_004192 ASMTL link to infopage 0.572517 1.760214e-10 9.149768e-6 2.231651e-7
42 8179391 8169657 NM_001105576 ANKRD58 link to infopage 0.570754 2.059560e-10 1.070580e-5 2.549000e-7
43 8179391 7910638 ENST00000410639 link to infopage 0.568652 2.480964e-10 1.289630e-5 2.999139e-7
44 8179391 8093826 NM_000683 ADRA2C link to infopage 0.567996 2.628414e-10 1.366276e-5 3.105173e-7
45 8118395 8002481 NM_032821 HYDIN link to infopage 0.567689 2.700426e-10 1.403708e-5 3.119352e-7
46 8178164 8002481 NM_032821 HYDIN link to infopage 0.567689 2.700426e-10 1.403708e-5 3.051540e-7
47 8179391 8032224 NM_152482 C19orf25 link to infopage 0.567572 2.728443e-10 1.418272e-5 3.017600e-7
48 8118395 8009913 NR_003587 MYO15B link to infopage 0.567569 2.729017e-10 1.418570e-5 2.955355e-7
49 8178164 8009913 NR_003587 MYO15B link to infopage 0.567569 2.729017e-10 1.418570e-5 2.895042e-7
50 8179391 7928291 NM_004273 CHST3 link to infopage 0.566520 2.992293e-10 1.555424e-5 3.110847e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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