[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4353	8115099	NM_002609	PDGFRB		platelet-derived growth factor receptor, beta polypeptide

Fetching correlation data, please wait...
Getting list of correlations for id 4353.
Getting list of p-values for id 4353.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8115099	7927367	NM_001040084	ANXA8	0.686005	6.735273e-16	1.167021e-11	1.167021e-11
2	8115099	8053872	NM_001002036	ASTL	0.676489	2.373276e-15	4.112175e-11	2.056088e-11
3	8115099	7927307	NM_001630	ANXA8L2	0.673722	3.393289e-15	5.879552e-11	1.959851e-11
4	8115099	8059028	NM_194302	CCDC108	0.672679	3.878957e-15	6.721068e-11	1.680267e-11
5	8115099	7934615	NM_004747	DLG5	0.671184	4.694087e-15	8.133445e-11	1.626689e-11
6	8115099	7935983	NM_005029	PITX3	0.668929	6.246396e-15	1.082313e-10	1.803855e-11
7	8115099	8035539	NM_001492	GDF1	0.665144	1.003282e-14	1.738387e-10	2.483409e-11
8	8115099	8086985	NM_000094	COL7A1	0.662633	1.368845e-14	2.371798e-10	2.964748e-11
9	8115099	8133704	NM_001110199	SRRM3	0.661970	1.485213e-14	2.573428e-10	2.859365e-11
10	8115099	8115691	NM_003062	SLIT3	0.661247	1.622851e-14	2.811914e-10	2.811914e-11
11	8115099	7959761	NM_181709	FAM101A	0.659565	1.992706e-14	3.452761e-10	3.138874e-11
12	8115099	7985690	BX648930	LOC440300	0.658248	2.338296e-14	4.051566e-10	3.376305e-11
13	8115099	8131056	NM_017781	CYP2W1	0.657753	2.482441e-14	4.301325e-10	3.308712e-11
14	8115099	7975696	NM_182894	VSX2	0.657317	2.616752e-14	4.534046e-10	3.238604e-11
15	8115099	8153346	NM_023946	LYNX1	0.656712	2.814724e-14	4.877072e-10	3.251381e-11
16	8115099	8033487	NM_032447	FBN3	0.654944	3.480019e-14	6.029828e-10	3.768643e-11
17	8115099	7947129	NM_001029865	DBX1	0.654674	3.593947e-14	6.227232e-10	3.663078e-11
18	8115099	7931097	NM_002775	HTRA1	0.654090	3.853581e-14	6.677100e-10	3.709500e-11
19	8115099	8038299	NM_033142	CGB7	0.653433	4.167230e-14	7.220559e-10	3.800294e-11
20	8115099	8067011	NM_015339	ADNP	-0.653149	4.310324e-14	7.468499e-10	3.734249e-11
21	8115099	7944447	NM_022169	ABCG4	0.651682	5.128140e-14	8.885529e-10	4.231204e-11
22	8115099	8033023	NM_001134316	PRR22	0.650592	5.831421e-14	1.010410e-9	4.592774e-11
23	8115099	8087453	NM_198722	AMIGO3	0.649880	6.340571e-14	1.098631e-9	4.776655e-11
24	8115099	8135099	NM_133457	EMID2	0.647465	8.406964e-14	1.456675e-9	6.069478e-11
25	8115099	8076865	NM_001001694	IL17REL	0.643986	1.256689e-13	2.177465e-9	8.709861e-11
26	8115099	7945712	NM_199292	TH	0.643909	1.267950e-13	2.196976e-9	8.449908e-11
27	8115099	7934141	NM_022146	NPFFR1	0.643691	1.300035e-13	2.252571e-9	8.342855e-11
28	8115099	8134737	NM_203397	MBLAC1	0.642968	1.412194e-13	2.446908e-9	8.738957e-11
29	8115099	8053728	NM_000798	DRD5	0.642126	1.554746e-13	2.693909e-9	9.289340e-11
30	8115099	8099218	NM_020416	PPP2R2C	0.641964	1.583716e-13	2.744105e-9	9.147015e-11
31	8115099	8110382	NM_030567	PRR7	0.641535	1.663019e-13	2.881513e-9	9.295204e-11
32	8115099	7952227	NM_015645	C1QTNF5	0.641123	1.742897e-13	3.019918e-9	9.437244e-11
33	8115099	7896865	NM_153254	TTLL10	0.639696	2.048659e-13	3.549711e-9	1.075670e-10
34	8115099	8030753	NM_001030047	KLK3	0.639672	2.054219e-13	3.559345e-9	1.046866e-10
35	8115099	8114550	NM_004883	NRG2	0.639624	2.065518e-13	3.578924e-9	1.022550e-10
36	8115099	8010903	NM_006987	RPH3AL	0.639580	2.075758e-13	3.596665e-9	9.990737e-11
37	8115099	7990928	ENST00000342039		0.638800	2.266671e-13	3.927461e-9	1.061476e-10
38	8115099	7985459	ENST00000342039		0.638800	2.266671e-13	3.927461e-9	1.033542e-10
39	8115099	7985418	ENST00000342039		0.638800	2.266671e-13	3.927461e-9	1.007041e-10
40	8115099	8110688	NM_004174	SLC9A3	0.638579	2.323697e-13	4.026270e-9	1.006568e-10
41	8115099	7987701	NM_016642	SPTBN5	0.638488	2.347622e-13	4.067725e-9	9.921280e-11
42	8115099	8030736	NM_033068	ACPT	0.637722	2.558633e-13	4.433343e-9	1.055558e-10
43	8115099	8159036	NM_139025	ADAMTS13	0.637594	2.595681e-13	4.497536e-9	1.045939e-10
44	8115099	8154132	NR_026663	C9orf70	0.637557	2.606647e-13	4.516537e-9	1.026486e-10
45	8115099	7952243	NM_015645	C1QTNF5	0.636810	2.834004e-13	4.910478e-9	1.091217e-10
46	8115099	8016382	NM_199262	SP6	0.636068	3.078713e-13	5.334486e-9	1.159671e-10
47	8115099	8137783	NM_001097620	TMEM184A	0.635899	3.137304e-13	5.436007e-9	1.156597e-10
48	8115099	7929664	NM_138413	DHDPSL	0.635812	3.168030e-13	5.489246e-9	1.143593e-10
49	8115099	8049536	NM_001137550	LRRFIP1	0.635359	3.331716e-13	5.772864e-9	1.178136e-10
50	8115099	8125234	NM_019105	TNXB	0.635238	3.377038e-13	5.851394e-9	1.170279e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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