[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2323	8140782	NM_000927	ABCB1		ATP-binding cassette, sub-family B (MDR/TAP), member 1

Fetching correlation data, please wait...
Getting list of correlations for id 2323.
Getting list of p-values for id 2323.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8140782	8152119	NM_001040624	NCALD	0.693287	2.486119e-16	4.307698e-12	4.307698e-12
2	8140782	7950810	NM_206927	SYTL2	0.687053	5.845976e-16	1.012932e-11	5.064662e-12
3	8140782	7974363	NM_000953	PTGDR	0.675386	2.738189e-15	4.744460e-11	1.581487e-11
4	8140782	7953892	NM_016523	KLRF1	0.653049	4.361690e-14	7.557501e-10	1.889375e-10
5	8140782	8129482	NM_001017373	SAMD3	0.639866	2.009800e-13	3.482381e-9	6.964762e-10
6	8140782	8151101	NM_001080416	MYBL1	0.639497	2.095263e-13	3.630462e-9	6.050770e-10
7	8140782	8139100	M30894	TARP	0.638760	2.276901e-13	3.945187e-9	5.635981e-10
8	8140782	7965812	NM_024312	GNPTAB	0.637068	2.753318e-13	4.770674e-9	5.963342e-10
9	8140782	7951752	NM_020886	USP28	0.632853	4.397598e-13	7.619719e-9	8.466354e-10
10	8140782	7961151	NM_007360	KLRK1	0.629517	6.338066e-13	1.098197e-8	1.098197e-9
11	8140782	8156026	NM_001098802	CEP78	0.628108	7.386642e-13	1.279883e-8	1.163530e-9
12	8140782	7961166	NM_013431	KLRC4	0.627838	7.606199e-13	1.317926e-8	1.098272e-9
13	8140782	7953949	NM_002262	KLRD1	0.624429	1.097629e-12	1.901862e-8	1.462971e-9
14	8140782	7966052	NM_004075	CRY1	0.617427	2.299614e-12	3.984542e-8	2.846101e-9
15	8140782	8057771	NM_003151	STAT4	0.609463	5.217399e-12	9.040187e-8	6.026791e-9
16	8140782	7906386	NM_152501	PYHIN1	0.609018	5.458219e-12	9.457455e-8	5.910910e-9
17	8140782	8014248	NM_144682	SLFN13	0.606466	7.059458e-12	1.223192e-7	7.195249e-9
18	8140782	7922040	NM_198053	CD247	0.601359	1.173398e-11	2.033146e-7	1.129526e-8
19	8140782	8020806	NM_017831	RNF125	0.596436	1.898857e-11	3.290149e-7	1.731658e-8
20	8140782	8094533	AK304357	DTHD1	0.592073	2.889440e-11	5.006533e-7	2.503267e-8
21	8140782	8089261	NM_170662	CBLB	0.586435	4.925161e-11	8.533826e-7	4.063727e-8
22	8140782	7977482	NM_138376	TTC5	0.585561	5.344764e-11	9.260872e-7	4.209487e-8
23	8140782	8159992	NM_024896	ERMP1	0.584375	5.969827e-11	1.034392e-6	4.497356e-8
24	8140782	8006602	NM_002984	CCL4	0.580905	8.228256e-11	1.425710e-6	5.940458e-8
25	8140782	8139113	ENST00000447997		0.575646	1.328792e-10	2.302399e-6	9.209594e-8
26	8140782	8059854	NM_005737	ARL4C	0.573165	1.660987e-10	2.877992e-6	1.106920e-7
27	8140782	7974835	NM_006255	PRKCH	0.572614	1.744961e-10	3.023494e-6	1.119813e-7
28	8140782	8171516	NM_002893	RBBP7	0.571732	1.887897e-10	3.271159e-6	1.168271e-7
29	8140782	8091190	NM_001184	ATR	0.570245	2.154756e-10	3.733545e-6	1.287429e-7
30	8140782	8042207	NM_152516	COMMD1	0.567413	2.766711e-10	4.793881e-6	1.597960e-7
31	8140782	7932512	NM_022365	DNAJC1	0.567397	2.770593e-10	4.800607e-6	1.548583e-7
32	8140782	8136614	NM_018238	AGK	0.566796	2.920870e-10	5.060991e-6	1.581560e-7
33	8140782	7953835	NM_005810	KLRG1	0.566660	2.955719e-10	5.121375e-6	1.551932e-7
34	8140782	7961059	NM_002258	KLRB1	0.566373	3.031160e-10	5.252091e-6	1.544733e-7
35	8140782	8027390	NM_006627	POP4	0.566151	3.090496e-10	5.354903e-6	1.529972e-7
36	8140782	7917649	NM_003243	TGFBR3	0.564739	3.495953e-10	6.057437e-6	1.682622e-7
37	8140782	8108238	NM_001001419	SMAD5	0.564514	3.564980e-10	6.177041e-6	1.669470e-7
38	8140782	8128572	NM_002726	PREP	0.564166	3.674585e-10	6.366953e-6	1.675514e-7
39	8140782	7993298	NM_005236	ERCC4	0.563294	3.963565e-10	6.867670e-6	1.760941e-7
40	8140782	7950016	NM_153451	ORAOV1	0.562052	4.413089e-10	7.646560e-6	1.911640e-7
41	8140782	8100026	NM_006095	ATP8A1	0.561903	4.470143e-10	7.745417e-6	1.889126e-7
42	8140782	8145586	NM_018091	ELP3	0.561147	4.770655e-10	8.266114e-6	1.968122e-7
43	8140782	7906061	NM_152280	SYT11	0.561029	4.819340e-10	8.350470e-6	1.941970e-7
44	8140782	7932703	NM_145698	ACBD5	0.559564	5.465267e-10	9.469668e-6	2.152197e-7
45	8140782	8044849	NM_002830	PTPN4	0.557985	6.253978e-10	1.083627e-5	2.408060e-7
46	8140782	8012581	NM_004853	STX8	0.557295	6.631648e-10	1.149066e-5	2.497969e-7
47	8140782	8154531	NM_017925	DENND4C	0.556822	6.903470e-10	1.196164e-5	2.545030e-7
48	8140782	8128956	NM_002037	FYN	0.556080	7.351378e-10	1.273773e-5	2.653694e-7
49	8140782	8137448	NM_022087	GALNT11	0.554949	8.088158e-10	1.401435e-5	2.860072e-7
50	8140782	7925823	NM_012341	GTPBP4	0.554837	8.164537e-10	1.414669e-5	2.829339e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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