[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1731	8166525	NM_016937	POLA1		polymerase (DNA directed), alpha 1, catalytic subunit

Fetching correlation data, please wait...
Getting list of correlations for id 1731.
Getting list of p-values for id 1731.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8166525	8090715	NM_032169	ACAD11	0.675420	2.726202e-15	4.723689e-11	4.723689e-11
2	8166525	7978449	NM_015382	HECTD1	0.670814	4.919994e-15	8.524873e-11	4.262436e-11
3	8166525	7916443	NM_015306	USP24	0.664596	1.073934e-14	1.860805e-10	6.202683e-11
4	8166525	7916562	NM_002136	HNRNPA1	0.661742	1.527369e-14	2.646472e-10	6.616179e-11
5	8166525	8034313	NR_002944	HNRPA1L-2	0.659944	1.902997e-14	3.297322e-10	6.594644e-11
6	8166525	8008493	NM_016424	LUC7L3	0.659727	1.953892e-14	3.385508e-10	5.642513e-11
7	8166525	7977674	NM_007192	SUPT16H	0.658686	2.217474e-14	3.842218e-10	5.488882e-11
8	8166525	8022814	NM_002136	HNRNPA1	0.657145	2.671508e-14	4.628921e-10	5.786152e-11
9	8166525	8051622	NM_001031684	SRSF7	0.656394	2.924589e-14	5.067435e-10	5.630483e-11
10	8166525	7982957	NM_001080541	MGA	0.655978	3.074398e-14	5.327010e-10	5.327010e-11
11	8166525	8033455	ENST00000327607		-0.655127	3.404493e-14	5.898964e-10	5.362695e-11
12	8166525	7929201	NM_003972	BTAF1	0.654069	3.862991e-14	6.693405e-10	5.577837e-11
13	8166525	8107066	NM_005575	LNPEP	0.653875	3.953305e-14	6.849892e-10	5.269147e-11
14	8166525	7995574	NM_002136	HNRNPA1	0.653712	4.030799e-14	6.984165e-10	4.988689e-11
15	8166525	7899957	NM_005095	ZMYM4	0.653656	4.057960e-14	7.031227e-10	4.687484e-11
16	8166525	8087951	NM_018165	PBRM1	0.652133	4.862135e-14	8.424622e-10	5.265389e-11
17	8166525	8158912	NM_020064	BARHL1	-0.650568	5.847756e-14	1.013241e-9	5.960240e-11
18	8166525	7974146	NM_017922	PRPF39	0.649742	6.443744e-14	1.116507e-9	6.202819e-11
19	8166525	8047518	NM_015934	NOP58	0.648411	7.529636e-14	1.304660e-9	6.866632e-11
20	8166525	8085815	NM_001068	TOP2B	0.647963	7.933162e-14	1.374579e-9	6.872895e-11
21	8166525	8122409	NM_003630	PEX3	0.646935	8.940863e-14	1.549183e-9	7.377063e-11
22	8166525	7914791	NM_005066	SFPQ	0.646722	9.165146e-14	1.588045e-9	7.218385e-11
23	8166525	8116664	NM_003913	PRPF4B	0.645579	1.046140e-13	1.812647e-9	7.881072e-11
24	8166525	8054614	NM_022662	ANAPC1	0.645295	1.080992e-13	1.873034e-9	7.804309e-11
25	8166525	8128650	NM_007214	SEC63	0.645077	1.108532e-13	1.920754e-9	7.683015e-11
26	8166525	7977203	NM_001080464	ASPG	-0.644693	1.158572e-13	2.007457e-9	7.720990e-11
27	8166525	7917156	NM_003902	FUBP1	0.642102	1.558966e-13	2.701220e-9	1.000452e-10
28	8166525	7924558	NM_002533	NVL	0.641471	1.675249e-13	2.902704e-9	1.036680e-10
29	8166525	7947991	NM_015231	NUP160	0.640727	1.823026e-13	3.158757e-9	1.089227e-10
30	8166525	7974066	NM_002687	PNN	0.639822	2.019838e-13	3.499774e-9	1.166591e-10
31	8166525	7904340	NM_006699	MAN1A2	0.639717	2.043801e-13	3.541295e-9	1.142353e-10
32	8166525	8055060	NM_018383	WDR33	0.639594	2.072399e-13	3.590846e-9	1.122139e-10
33	8166525	7957633	NM_006838	METAP2	0.639240	2.157080e-13	3.737572e-9	1.132598e-10
34	8166525	8098512	NM_021942	C4orf41	0.638973	2.223017e-13	3.851821e-9	1.132888e-10
35	8166525	8042737	NM_015120	ALMS1	0.638351	2.384155e-13	4.131025e-9	1.180293e-10
36	8166525	7944850	NM_032811	TBRG1	0.637905	2.506664e-13	4.343296e-9	1.206471e-10
37	8166525	8114861	NM_020117	LARS	0.636581	2.907352e-13	5.037568e-9	1.361505e-10
38	8166525	7971820	NM_016075	VPS36	0.636080	3.074671e-13	5.327482e-9	1.401969e-10
39	8166525	7911506	NM_004421	DVL1	-0.635439	3.302339e-13	5.721963e-9	1.467170e-10
40	8166525	8080958	NM_018971	GPR27	-0.635140	3.413953e-13	5.915357e-9	1.478839e-10
41	8166525	8040985	NM_032434	ZNF512	0.634713	3.579642e-13	6.202446e-9	1.512792e-10
42	8166525	8159624	BC052297	C9orf169	-0.634641	3.608399e-13	6.252273e-9	1.488636e-10
43	8166525	8138670	NM_031243	HNRNPA2B1	0.633824	3.950427e-13	6.844905e-9	1.591838e-10
44	8166525	8120698	NM_133645	MTO1	0.633701	4.004706e-13	6.938955e-9	1.577035e-10
45	8166525	7924351	NM_004446	EPRS	0.633154	4.253802e-13	7.370563e-9	1.637903e-10
46	8166525	8177560	NM_018429	BDP1	0.633036	4.309508e-13	7.467085e-9	1.623279e-10
47	8166525	7972190	NM_022118	RBM26	0.632964	4.344194e-13	7.527186e-9	1.601529e-10
48	8166525	8036494	NM_152657	GGN	-0.632845	4.401605e-13	7.626661e-9	1.588888e-10
49	8166525	8106025	NM_018429	BDP1	0.632757	4.444498e-13	7.700982e-9	1.571629e-10
50	8166525	8006638	NM_024835	GGNBP2	0.632647	4.498271e-13	7.794155e-9	1.558831e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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