[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3000	8098150	NM_018352	C4orf43		chromosome 4 open reading frame 43

Fetching correlation data, please wait...
Getting list of correlations for id 3000.
Getting list of p-values for id 3000.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8098150	7970569	NM_014363	SACS	0.699146	1.091154e-16	1.890643e-12	1.890643e-12
2	8098150	8020323	NM_003799	RNMT	0.695784	1.754396e-16	3.039842e-12	1.519921e-12
3	8098150	8106303	NM_016218	POLK	0.694557	2.083155e-16	3.609483e-12	1.203161e-12
4	8098150	8078270	NM_002948	RPL15	0.693041	2.572435e-16	4.457259e-12	1.114315e-12
5	8098150	8150870	NM_002806	PSMC6	0.692586	2.739833e-16	4.747308e-12	9.494616e-13
6	8098150	7966534	NM_001024662	RPL6	0.689308	4.301398e-16	7.453033e-12	1.242172e-12
7	8098150	8022170	NM_001024662	RPL6	0.687072	5.830889e-16	1.010318e-11	1.443312e-12
8	8098150	7902448	NM_001035006	RPL17	0.682775	1.038284e-15	1.799035e-11	2.248794e-12
9	8098150	8046997	NM_019048	ASNSD1	0.680203	1.459925e-15	2.529612e-11	2.810679e-12
10	8098150	8151561	NM_024699	ZFAND1	0.679402	1.622100e-15	2.810612e-11	2.810612e-12
11	8098150	7986765	NM_000969	RPL5	0.677004	2.219625e-15	3.845944e-11	3.496313e-12
12	8098150	7901895	NM_032852	ATG4C	0.675111	2.837314e-15	4.916214e-11	4.096845e-12
13	8098150	7903582	NM_001035006	RPL17	0.675005	2.876167e-15	4.983534e-11	3.833488e-12
14	8098150	7917604	NM_201269	ZNF644	0.674445	3.091627e-15	5.356863e-11	3.826331e-12
15	8098150	7935002	NM_003133	SRP9	0.674349	3.130207e-15	5.423710e-11	3.615807e-12
16	8098150	7962013	NM_016570	ERGIC2	0.672512	3.962593e-15	6.865985e-11	4.291241e-12
17	8098150	7957633	NM_006838	METAP2	0.671533	4.489990e-15	7.779806e-11	4.576356e-12
18	8098150	8076511	NM_000969	RPL5	0.670872	4.883943e-15	8.462409e-11	4.701338e-12
19	8098150	8135235	NM_004279	PMPCB	0.670211	5.311606e-15	9.203419e-11	4.843905e-12
20	8098150	7903010	NM_000969	RPL5	0.669523	5.794979e-15	1.004096e-10	5.020480e-12
21	8098150	8096463	NM_001128429	SMARCAD1	0.668004	7.017735e-15	1.215963e-10	5.790300e-12
22	8098150	8109802	NM_002887	RARS	0.666696	8.268461e-15	1.432676e-10	6.512164e-12
23	8098150	7947221	NM_018362	LIN7C	0.666542	8.428412e-15	1.460391e-10	6.349526e-12
24	8098150	8027674	NM_018443	ZNF302	0.666055	8.956702e-15	1.551928e-10	6.466366e-12
25	8098150	7943580	NM_003478	CUL5	0.665925	9.103320e-15	1.577332e-10	6.309329e-12
26	8098150	8116969	NM_016167	NOL7	0.665630	9.444029e-15	1.636367e-10	6.293719e-12
27	8098150	7903908	NM_006090	CEPT1	0.665487	9.613996e-15	1.665817e-10	6.169693e-12
28	8098150	7975224	NM_004094	EIF2S1	0.663401	1.245194e-14	2.157548e-10	7.705530e-12
29	8098150	8050443	NM_001142286	SMC6	0.663123	1.288629e-14	2.232808e-10	7.699339e-12
30	8098150	8144894	NM_018142	INTS10	0.661406	1.591496e-14	2.757585e-10	9.191950e-12
31	8098150	8152465	NM_003756	EIF3H	0.661334	1.605563e-14	2.781958e-10	8.974059e-12
32	8098150	7973840	NM_001030055	ARHGAP5	0.660856	1.702284e-14	2.949547e-10	9.217335e-12
33	8098150	7965855	NM_024057	NUP37	0.660551	1.767048e-14	3.061764e-10	9.278073e-12
34	8098150	8008530	NM_016001	UTP18	0.659781	1.941146e-14	3.363423e-10	9.892420e-12
35	8098150	7973414	NM_015514	NGDN	0.659524	2.002720e-14	3.470114e-10	9.914610e-12
36	8098150	7901038	NM_001012	RPS8	0.658334	2.314040e-14	4.009538e-10	1.113760e-11
37	8098150	7901867	NM_003368	USP1	0.656851	2.767973e-14	4.796067e-10	1.296234e-11
38	8098150	8083333	NM_032025	EIF2A	0.656623	2.844979e-14	4.929496e-10	1.297236e-11
39	8098150	7901418	NM_152265	BTF3L4	0.656420	2.915473e-14	5.051639e-10	1.295292e-11
40	8098150	8093336	NM_003441	ZNF141	0.656090	3.033457e-14	5.256072e-10	1.314018e-11
41	8098150	7927267	NM_019054	FAM35A	0.654980	3.464856e-14	6.003556e-10	1.464282e-11
42	8098150	8047815	NM_001136194	FASTKD2	0.654810	3.536101e-14	6.127002e-10	1.458810e-11
43	8098150	8084694	NM_001967	EIF4A2	0.652630	4.583919e-14	7.942556e-10	1.847106e-11
44	8098150	8045619	NM_015630	EPC2	0.652557	4.623580e-14	8.011278e-10	1.820745e-11
45	8098150	8147864	NM_014673	TTC35	0.652197	4.825252e-14	8.360714e-10	1.857936e-11
46	8098150	8092564	NM_004593	TRA2B	0.652059	4.904383e-14	8.497825e-10	1.847353e-11
47	8098150	7951447	NM_152434	CWF19L2	0.651527	5.222822e-14	9.049584e-10	1.925444e-11
48	8098150	7971541	NM_003850	SUCLA2	0.651160	5.454002e-14	9.450150e-10	1.968781e-11
49	8098150	8025998	NM_003437	ZNF136	0.651010	5.551531e-14	9.619138e-10	1.963089e-11
50	8098150	7957404	BC029120	C12orf26	0.650931	5.603119e-14	9.708524e-10	1.941705e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation