[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1335	7958275	NM_018082	POLR3B		polymerase (RNA) III (DNA directed) polypeptide B

Fetching correlation data, please wait...
Getting list of correlations for id 1335.
Getting list of p-values for id 1335.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7958275	8055060	NM_018383	WDR33	0.799396	1.581044e-24	2.739475e-20	2.739475e-20
2	7958275	7938687	NM_005013	NUCB2	0.791843	8.618915e-24	1.493399e-19	7.466997e-20
3	7958275	8166500	NM_003410	ZFX	0.782851	5.938308e-23	1.028931e-18	3.429769e-19
4	7958275	7927814	NM_012238	SIRT1	0.782464	6.439692e-23	1.115805e-18	2.789513e-19
5	7958275	8114861	NM_020117	LARS	0.780777	9.148794e-23	1.585212e-18	3.170423e-19
6	7958275	8053046	NM_003584	DUSP11	0.777897	1.654256e-22	2.866329e-18	4.777215e-19
7	7958275	7972190	NM_022118	RBM26	0.776232	2.320900e-22	4.021424e-18	5.744892e-19
8	7958275	7926021	NM_001145547	RBM17	0.770606	7.130210e-22	1.235451e-17	1.544314e-18
9	7958275	7917120	NM_015017	USP33	0.770574	7.175428e-22	1.243286e-17	1.381429e-18
10	7958275	7989253	NM_024755	SLTM	0.770362	7.480677e-22	1.296177e-17	1.296177e-18
11	7958275	8140878	NM_194455	KRIT1	0.767594	1.283665e-21	2.224206e-17	2.022006e-18
12	7958275	8040985	NM_032434	ZNF512	0.766307	1.645620e-21	2.851366e-17	2.376139e-18
13	7958275	8052526	NM_003400	XPO1	0.765722	1.841675e-21	3.191071e-17	2.454670e-18
14	7958275	8101340	NR_003249	HNRPDL	0.765242	2.019163e-21	3.498605e-17	2.499003e-18
15	7958275	7979931	NM_005466	MED6	0.764987	2.120147e-21	3.673579e-17	2.449053e-18
16	7958275	8083183	NM_001080415	SR140	0.764823	2.187631e-21	3.790507e-17	2.369067e-18
17	7958275	8158372	NM_003011	SET	0.764273	2.429538e-21	4.209660e-17	2.476270e-18
18	7958275	7928300	NM_173473	ANAPC16	0.764013	2.552992e-21	4.423569e-17	2.457538e-18
19	7958275	7903239	NM_000028	AGL	0.763323	2.910792e-21	5.043529e-17	2.654489e-18
20	7958275	8154531	NM_017925	DENND4C	0.761877	3.825223e-21	6.627964e-17	3.313982e-18
21	7958275	7924190	NM_144567	ANGEL2	0.761104	4.423645e-21	7.664850e-17	3.649929e-18
22	7958275	8006638	NM_024835	GGNBP2	0.760410	5.037259e-21	8.728059e-17	3.967300e-18
23	7958275	7903321	NM_001130841	RTCD1	0.760392	5.054756e-21	8.758376e-17	3.807990e-18
24	7958275	7968931	NM_031431	COG3	0.759791	5.653977e-21	9.796646e-17	4.081936e-18
25	7958275	7953878	NM_001004419	CLEC2D	0.759611	5.847352e-21	1.013171e-16	4.052683e-18
26	7958275	8151074	NM_002603	PDE7A	0.759330	6.161375e-21	1.067581e-16	4.106082e-18
27	7958275	7995552	NM_015247	CYLD	0.758635	7.009307e-21	1.214503e-16	4.498158e-18
28	7958275	8078834	NM_020839	WDR48	0.758491	7.199233e-21	1.247411e-16	4.455040e-18
29	7958275	8052845	NM_022173	TIA1	0.758019	7.856176e-21	1.361240e-16	4.693930e-18
30	7958275	8130408	NM_001130700	IPCEF1	0.757812	8.162508e-21	1.414318e-16	4.714392e-18
31	7958275	7956697	NM_015026	MON2	0.757268	9.023870e-21	1.563566e-16	5.043761e-18
32	7958275	7903519	NM_018061	PRPF38B	0.757048	9.396677e-21	1.628162e-16	5.088007e-18
33	7958275	7950796	NM_001039618	CREBZF	0.756917	9.625723e-21	1.667849e-16	5.054088e-18
34	7958275	7968516	NM_015032	PDS5B	0.756192	1.099500e-20	1.905103e-16	5.603245e-18
35	7958275	8050565	NM_015317	PUM2	0.756171	1.103868e-20	1.912673e-16	5.464780e-18
36	7958275	8063283	NM_001316	CSE1L	0.755707	1.201691e-20	2.082170e-16	5.783806e-18
37	7958275	8134180	NM_019004	ANKIB1	0.755034	1.358573e-20	2.353999e-16	6.362161e-18
38	7958275	7980523	NM_015859	GTF2A1	0.754813	1.414352e-20	2.450648e-16	6.449074e-18
39	7958275	8101043	NM_203505	G3BP2	0.754695	1.444969e-20	2.503698e-16	6.419737e-18
40	7958275	8078110	NM_014296	CAPN7	0.754142	1.597806e-20	2.768519e-16	6.921298e-18
41	7958275	7985166	NM_004136	IREB2	0.754056	1.622740e-20	2.811722e-16	6.857857e-18
42	7958275	7944285	NM_001655	ARCN1	0.754029	1.630699e-20	2.825512e-16	6.727409e-18
43	7958275	7916570	NM_145243	OMA1	0.754011	1.636243e-20	2.835119e-16	6.593300e-18
44	7958275	8087951	NM_018165	PBRM1	0.752664	2.087202e-20	3.616496e-16	8.219308e-18
45	7958275	8051820	NM_022065	THADA	0.752493	2.152227e-20	3.729164e-16	8.287031e-18
46	7958275	8084016	NM_006218	PIK3CA	0.752463	2.164081e-20	3.749703e-16	8.151528e-18
47	7958275	8111629	NM_153485	NUP155	0.752439	2.173526e-20	3.766069e-16	8.012913e-18
48	7958275	8017235	NM_006380	APPBP2	0.752229	2.257128e-20	3.910925e-16	8.147761e-18
49	7958275	7939242	NM_005898	CAPRIN1	0.751875	2.405232e-20	4.167545e-16	8.505193e-18
50	7958275	8092849	NM_024524	ATP13A3	0.751858	2.412484e-20	4.180111e-16	8.360221e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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