[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7098	7935990	NM_002779	PSD		pleckstrin and Sec7 domain containing

Fetching correlation data, please wait...
Getting list of correlations for id 7098.
Getting list of p-values for id 7098.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7935990	7928291	NM_004273	CHST3	0.786702	2.628321e-23	4.554092e-19	4.554092e-19
2	7935990	8032094	NM_024888	LPPR3	0.780349	9.995597e-23	1.731937e-18	8.659686e-19
3	7935990	7968260	NM_145657	GSX1	0.779501	1.190671e-22	2.063075e-18	6.876917e-19
4	7935990	7896985	NM_080875	MIB2	0.775983	2.440507e-22	4.228667e-18	1.057167e-18
5	7935990	8093826	NM_000683	ADRA2C	0.773276	4.202352e-22	7.281415e-18	1.456283e-18
6	7935990	8082289	NM_152889	CHST13	0.764741	2.222286e-21	3.850556e-17	6.417593e-18
7	7935990	8060604	NM_000915	OXT	0.763637	2.742395e-21	4.751747e-17	6.788210e-18
8	7935990	7946354	NM_002315	LMO1	0.762429	3.447256e-21	5.973061e-17	7.466327e-18
9	7935990	8121209	NM_005604	POU3F2	0.762065	3.692180e-21	6.397441e-17	7.108268e-18
10	7935990	8074131	NM_001080420	SHANK3	0.761407	4.178951e-21	7.240869e-17	7.240869e-18
11	7935990	8039504	NM_001145176	SHISA7	0.760905	4.591162e-21	7.955107e-17	7.231916e-18
12	7935990	7950032	NM_002007	FGF4	0.760407	5.039936e-21	8.732696e-17	7.277247e-18
13	7935990	8046276	NM_001003845	SP5	0.759194	6.319032e-21	1.094899e-16	8.422298e-18
14	7935990	7937560	NM_002457	MUC2	0.758806	6.790989e-21	1.176675e-16	8.404819e-18
15	7935990	8155569	BC119675	FAM27E3	0.757983	7.909392e-21	1.370460e-16	9.136403e-18
16	7935990	8161437	BC119675	FAM27E3	0.757983	7.909392e-21	1.370460e-16	8.565378e-18
17	7935990	8161426	BC119675	FAM27E3	0.757983	7.909392e-21	1.370460e-16	8.061532e-18
18	7935990	8016168	NM_133373	PLCD3	0.757580	8.519925e-21	1.476247e-16	8.201374e-18
19	7935990	8039362	NM_178837	C19orf51	0.757103	9.302210e-21	1.611794e-16	8.483126e-18
20	7935990	7897860	NM_001243	TNFRSF8	0.756980	9.514588e-21	1.648593e-16	8.242964e-18
21	7935990	8030015	NM_012451	SYNGR4	0.756796	9.842779e-21	1.705458e-16	8.121230e-18
22	7935990	7978093	NM_032452	JPH4	0.756766	9.897482e-21	1.714937e-16	7.795167e-18
23	7935990	8037785	NM_033258	GNG8	0.756620	1.016574e-20	1.761418e-16	7.658340e-18
24	7935990	7940022	NM_178570	RTN4RL2	0.753987	1.643152e-20	2.847089e-16	1.186287e-17
25	7935990	8174642	ENST00000436902		0.753471	1.804229e-20	3.126187e-16	1.250475e-17
26	7935990	7992147	NM_021098	CACNA1H	0.752543	2.133094e-20	3.696012e-16	1.421543e-17
27	7935990	8031084	NM_031895	CACNG8	0.751784	2.444876e-20	4.236237e-16	1.568977e-17
28	7935990	8073449	NM_014460	CSDC2	0.750918	2.854762e-20	4.946445e-16	1.766588e-17
29	7935990	7898431	NM_016233	PADI3	0.750697	2.969612e-20	5.145447e-16	1.774292e-17
30	7935990	8024306	NM_005883	APC2	0.750308	3.182868e-20	5.514955e-16	1.838318e-17
31	7935990	7992758	NM_172229	KREMEN2	0.749067	3.967787e-20	6.874984e-16	2.217737e-17
32	7935990	8153876	NM_025251	ARHGAP39	0.749007	4.009851e-20	6.947868e-16	2.171209e-17
33	7935990	8087145	NM_001407	CELSR3	0.746635	6.088174e-20	1.054898e-15	3.196660e-17
34	7935990	8156743	NM_004473	FOXE1	0.746449	6.289977e-20	1.089864e-15	3.205483e-17
35	7935990	8093440	NM_001004356	FGFRL1	0.745961	6.849196e-20	1.186760e-15	3.390744e-17
36	7935990	8153828	NM_003923	FOXH1	0.745697	7.172254e-20	1.242736e-15	3.452046e-17
37	7935990	7994052	NM_006043	HS3ST2	0.745662	7.216457e-20	1.250395e-15	3.379447e-17
38	7935990	8005328	NM_016239	MYO15A	0.744421	8.953508e-20	1.551374e-15	4.082564e-17
39	7935990	8039605	NM_001005850	ZNF835	0.744225	9.262177e-20	1.604857e-15	4.115019e-17
40	7935990	8033462	NM_206833	CTXN1	0.744050	9.547730e-20	1.654335e-15	4.135838e-17
41	7935990	8028719	NM_016941	DLL3	0.743865	9.857751e-20	1.708053e-15	4.165982e-17
42	7935990	8098732	NM_033178	DUX4	0.743810	9.950667e-20	1.724152e-15	4.105124e-17
43	7935990	8037788	NM_145056	DACT3	0.743132	1.118676e-19	1.938331e-15	4.507745e-17
44	7935990	7906197	NM_021817	HAPLN2	0.742859	1.172525e-19	2.031633e-15	4.617348e-17
45	7935990	8098740	NM_033178	DUX4	0.742124	1.330108e-19	2.304678e-15	5.121507e-17
46	7935990	8025375	NM_005624	CCL25	0.741802	1.405528e-19	2.435358e-15	5.294257e-17
47	7935990	8064676	NM_145762	GFRA4	0.741558	1.465498e-19	2.539269e-15	5.402699e-17
48	7935990	8010696	NM_148896	NPB	0.741556	1.466049e-19	2.540224e-15	5.292133e-17
49	7935990	8019693	NM_148896	NPB	0.741556	1.466049e-19	2.540224e-15	5.184130e-17
50	7935990	8024100	NM_138690	GRIN3B	0.741519	1.475345e-19	2.556330e-15	5.112660e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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