[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5847	7974603	NM_002788	PSMA3		proteasome (prosome, macropain) subunit, alpha type, 3

Fetching correlation data, please wait...
Getting list of correlations for id 5847.
Getting list of p-values for id 5847.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7974603	8067017	NM_003859	DPM1	0.878377	8.467009e-35	1.467079e-30	1.467079e-30
2	7974603	8088718	NM_003968	UBA3	0.870667	1.637595e-33	2.837462e-29	1.418731e-29
3	7974603	7902634	NM_025065	RPF1	0.863186	2.431415e-32	4.212913e-28	1.404304e-28
4	7974603	8132943	NM_001762	CCT6A	0.861454	4.439689e-32	7.692648e-28	1.923162e-28
5	7974603	8136631	NM_003143	SSBP1	0.859809	7.805367e-32	1.352436e-27	2.704872e-28
6	7974603	7973770	NM_016106	SCFD1	0.858765	1.112287e-31	1.927259e-27	3.212098e-28
7	7974603	7917472	NM_001514	GTF2B	0.854239	5.004711e-31	8.671662e-27	1.238809e-27
8	7974603	7970546	NM_152726	EFHA1	0.853463	6.445448e-31	1.116803e-26	1.396003e-27
9	7974603	7971550	NM_014166	MED4	0.853420	6.534965e-31	1.132313e-26	1.258126e-27
10	7974603	8128716	NM_006016	CD164	0.850417	1.714411e-30	2.970559e-26	2.970559e-27
11	7974603	7974566	NM_018229	MUDENG	0.849673	2.169740e-30	3.759508e-26	3.417735e-27
12	7974603	7938448	NM_017944	USP47	0.847681	4.052263e-30	7.021356e-26	5.851130e-27
13	7974603	8135235	NM_004279	PMPCB	0.846517	5.814878e-30	1.007544e-25	7.750337e-27
14	7974603	7973902	NM_003136	SRP54	0.846301	6.215525e-30	1.076964e-25	7.692600e-27
15	7974603	8001185	NM_005880	DNAJA2	0.844079	1.226423e-29	2.125023e-25	1.416682e-26
16	7974603	8084694	NM_001967	EIF4A2	0.843867	1.307775e-29	2.265982e-25	1.416239e-26
17	7974603	8146216	NM_001135694	VDAC3	0.843042	1.678388e-29	2.908142e-25	1.710672e-26
18	7974603	8046848	NM_018471	ZC3H15	0.842363	2.058250e-29	3.566331e-25	1.981295e-26
19	7974603	8048703	NM_032338	LLPH	0.842271	2.115690e-29	3.665856e-25	1.929398e-26
20	7974603	8063283	NM_001316	CSE1L	0.841331	2.801566e-29	4.854273e-25	2.427136e-26
21	7974603	7981335	NM_001017963	HSP90AA1	0.841239	2.879562e-29	4.989417e-25	2.375913e-26
22	7974603	7980940	NM_004993	ATXN3	0.840106	4.028802e-29	6.980705e-25	3.173048e-26
23	7974603	8146243	NM_032410	HOOK3	0.839021	5.543301e-29	9.604877e-25	4.176034e-26
24	7974603	7921987	NM_019026	TMCO1	0.838280	6.884599e-29	1.192894e-24	4.970394e-26
25	7974603	8055672	NM_015702	MMADHC	0.838217	7.012358e-29	1.215031e-24	4.860125e-26
26	7974603	7922309	NM_003762	VAMP4	0.838200	7.047323e-29	1.221090e-24	4.696499e-26
27	7974603	8068062	NM_006447	USP16	0.837900	7.691053e-29	1.332629e-24	4.935662e-26
28	7974603	7961654	NM_002907	RECQL	0.837438	8.794929e-29	1.523897e-24	5.442490e-26
29	7974603	8100615	NM_018227	UBA6	0.837408	8.871442e-29	1.537155e-24	5.300534e-26
30	7974603	8082911	NM_006153	NCK1	0.837278	9.210765e-29	1.595949e-24	5.319831e-26
31	7974603	8109802	NM_002887	RARS	0.837143	9.578914e-29	1.659738e-24	5.353995e-26
32	7974603	8135688	NM_016200	NAA38	0.836434	1.175365e-28	2.036555e-24	6.364233e-26
33	7974603	8080923	NM_002802	PSMC1	0.836227	1.247502e-28	2.161547e-24	6.550141e-26
34	7974603	8095163	NM_001024924	EXOC1	0.835546	1.516912e-28	2.628354e-24	7.730453e-26
35	7974603	8092265	NM_020409	MRPL47	0.834802	1.875764e-28	3.250136e-24	9.286102e-26
36	7974603	8021015	NM_002647	PIK3C3	0.834627	1.971664e-28	3.416302e-24	9.489727e-26
37	7974603	7910550	NM_005999	TSNAX	0.834253	2.192990e-28	3.799794e-24	1.026971e-25
38	7974603	8055913	NM_017892	PRPF40A	0.834064	2.313319e-28	4.008287e-24	1.054812e-25
39	7974603	7976189	NM_002802	PSMC1	0.833305	2.867274e-28	4.968126e-24	1.273879e-25
40	7974603	7971820	NM_016075	VPS36	0.833098	3.039551e-28	5.266631e-24	1.316658e-25
41	7974603	7969935	NM_000123	ERCC5	0.832966	3.154957e-28	5.466594e-24	1.333316e-25
42	7974603	8020058	NM_021074	NDUFV2	0.832879	3.232497e-28	5.600948e-24	1.333559e-25
43	7974603	8131975	NM_006024	TAX1BP1	0.832559	3.537197e-28	6.128901e-24	1.425326e-25
44	7974603	7989253	NM_024755	SLTM	0.831096	5.321313e-28	9.220239e-24	2.095509e-25
45	7974603	8134122	NM_005751	AKAP9	0.830643	6.035364e-28	1.045748e-23	2.323884e-25
46	7974603	7957633	NM_006838	METAP2	0.830473	6.325289e-28	1.095983e-23	2.382571e-25
47	7974603	8057554	NM_014412	CACYBP	0.830094	7.025008e-28	1.217223e-23	2.589837e-25
48	7974603	8129706	NM_006620	HBS1L	0.829079	9.289326e-28	1.609561e-23	3.353253e-25
49	7974603	7939137	NM_006360	EIF3M	0.828947	9.630767e-28	1.668723e-23	3.405557e-25
50	7974603	8005501	NM_001135036	FAM18B2	0.828864	9.851863e-28	1.707032e-23	3.414064e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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