[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
898	8092055	NM_020949	SLC7A14		solute carrier family 7 (cationic amino acid transporter, y+ system), member 14

Fetching correlation data, please wait...
Getting list of correlations for id 898.
Getting list of p-values for id 898.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8092055	8007154	NM_021939	FKBP10	0.732090	7.148422e-19	1.238607e-14	1.238607e-14
2	8092055	7908437	NM_024529	CDC73	-0.712034	1.659552e-17	2.875506e-13	1.437753e-13
3	8092055	7913300	NM_016287	HP1BP3	-0.711805	1.717461e-17	2.975845e-13	9.919485e-14
4	8092055	7947744	NM_002334	LRP4	0.711178	1.886667e-17	3.269028e-13	8.172570e-14
5	8092055	8072436	NM_001002837	INPP5J	0.704563	5.005334e-17	8.672743e-13	1.734549e-13
6	8092055	7937612	NM_002458	MUC5B	0.698874	1.134210e-16	1.965246e-12	3.275411e-13
7	8092055	8026982	NM_032683	MPV17L2	0.698643	1.171904e-16	2.030558e-12	2.900797e-13
8	8092055	7925813	NR_027152	C10orf108	0.696464	1.594505e-16	2.762799e-12	3.453499e-13
9	8092055	7913450	NM_005529	HSPG2	0.695425	1.845143e-16	3.197079e-12	3.552310e-13
10	8092055	8006170	NR_015341	LRRC37BP1	-0.692955	2.603401e-16	4.510913e-12	4.510913e-13
11	8092055	7996027	NM_002996	CX3CL1	0.692899	2.623576e-16	4.545870e-12	4.132609e-13
12	8092055	7936762	NM_001001976	ATE1	-0.692515	2.767120e-16	4.794588e-12	3.995490e-13
13	8092055	8037513	NM_138568	EXOC3L2	0.690728	3.540793e-16	6.135132e-12	4.719332e-13
14	8092055	8110688	NM_004174	SLC9A3	0.689345	4.279573e-16	7.415215e-12	5.296582e-13
15	8092055	8098421	ENST00000410927		0.688747	4.643885e-16	8.046459e-12	5.364306e-13
16	8092055	7960744	NM_001733	C1R	0.688637	4.713853e-16	8.167693e-12	5.104808e-13
17	8092055	8147172	NM_003909	CPNE3	-0.686311	6.462605e-16	1.119776e-11	6.586915e-13
18	8092055	8028407	NM_000540	RYR1	0.686288	6.483138e-16	1.123333e-11	6.240740e-13
19	8092055	8093112	NM_015562	UBXN7	-0.685521	7.189348e-16	1.245698e-11	6.556307e-13
20	8092055	8128356	NM_012160	FBXL4	-0.683552	9.361840e-16	1.622126e-11	8.110630e-13
21	8092055	7952290	NM_012101	TRIM29	0.681768	1.187044e-15	2.056791e-11	9.794242e-13
22	8092055	8151842	NM_015496	KIAA1429	-0.681620	1.210516e-15	2.097461e-11	9.533915e-13
23	8092055	7995332			0.681587	1.215857e-15	2.106716e-11	9.159634e-13
24	8092055	8124038	ENST00000384464		0.681355	1.253698e-15	2.172282e-11	9.051175e-13
25	8092055	7913938	NM_001039775	AIM1L	0.681020	1.310623e-15	2.270916e-11	9.083665e-13
26	8092055	7937560	NM_002457	MUC2	0.680345	1.432856e-15	2.482709e-11	9.548881e-13
27	8092055	7971039	NM_001014286	FAM48A	-0.678616	1.798328e-15	3.115962e-11	1.154060e-12
28	8092055	8062782	NM_032883	TOX2	0.678436	1.841160e-15	3.190178e-11	1.139349e-12
29	8092055	8079021	NM_001904	CTNNB1	-0.678134	1.915311e-15	3.318660e-11	1.144366e-12
30	8092055	7987701	NM_016642	SPTBN5	0.677258	2.147526e-15	3.721018e-11	1.240339e-12
31	8092055	8110821	NM_001044	SLC6A3	0.677061	2.203178e-15	3.817446e-11	1.231434e-12
32	8092055	8163599	NM_015404	DFNB31	0.676567	2.349262e-15	4.070567e-11	1.272052e-12
33	8092055	7942717	NM_000260	MYO7A	0.676466	2.380459e-15	4.124620e-11	1.249885e-12
34	8092055	8034643	NM_001127221	CACNA1A	0.675930	2.551804e-15	4.421511e-11	1.300445e-12
35	8092055	7903321	NM_001130841	RTCD1	-0.674087	3.237744e-15	5.610040e-11	1.602868e-12
36	8092055	8097373	BC034253	C4orf29	-0.673508	3.487553e-15	6.042883e-11	1.678579e-12
37	8092055	8046922	NM_000090	COL3A1	0.673350	3.559229e-15	6.167076e-11	1.666777e-12
38	8092055	8108453	NM_032289	PSD2	0.673277	3.592511e-15	6.224744e-11	1.638091e-12
39	8092055	7975113	NM_145165	CHURC1	-0.672487	3.975332e-15	6.888057e-11	1.766169e-12
40	8092055	8008723	NM_000502	EPX	0.671894	4.287765e-15	7.429410e-11	1.857353e-12
41	8092055	8128669	NM_014028	OSTM1	-0.671254	4.652599e-15	8.061558e-11	1.966234e-12
42	8092055	7904433	NM_006623	PHGDH	0.670228	5.300217e-15	9.183687e-11	2.186592e-12
43	8092055	7924342	NM_018713	SLC30A10	0.670004	5.452752e-15	9.447983e-11	2.197205e-12
44	8092055	7978718	NM_006364	SEC23A	-0.669879	5.539664e-15	9.598575e-11	2.181494e-12
45	8092055	8082928	NM_001002026	CLDN18	0.669772	5.615255e-15	9.729553e-11	2.162123e-12
46	8092055	8113981	NM_004199	P4HA2	0.668538	6.561388e-15	1.136892e-10	2.471504e-12
47	8092055	7955305	NM_001652	AQP6	0.668462	6.624741e-15	1.147869e-10	2.442274e-12
48	8092055	7910520	NM_014236	GNPAT	-0.668372	6.699815e-15	1.160877e-10	2.418494e-12
49	8092055	8150918	ENST00000410273		0.667913	7.098030e-15	1.229876e-10	2.509950e-12
50	8092055	8001329	NM_004352	CBLN1	0.667811	7.190027e-15	1.245816e-10	2.491632e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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