[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7396	8118634	NM_002931	RING1		ring finger protein 1
8260	8178244	NM_002931	RING1		ring finger protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 7396.
Getting list of p-values for id 7396.
1 of 2 done.
Getting list of correlations for id 8260.
Getting list of p-values for id 8260.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118634	8178244	NM_002931	RING1	0.944965	8.715966e-52	3.020431e-47	3.020431e-47
2	8178244	8118634	NM_002931	RING1	0.944965	8.715966e-52	3.020431e-47	1.510215e-47
3	8178244	8130003	NM_031287	SF3B5	0.463202	6.502934e-7	2.253527e-2	7.511755e-3
4	8178244	8070811	NM_006936	SUMO3	0.435139	3.504738e-6	1.214532e-1	3.036329e-2
5	8178244	7992402	NM_004548	NDUFB10	0.422585	7.102205e-6	2.461198e-1	4.922396e-2
6	8178244	8178552	NM_021184	C6orf47	0.407848	1.571009e-5	5.444176e-1	9.073626e-2
7	8178244	8179808	NM_021184	C6orf47	0.407848	1.571009e-5	5.444176e-1	7.777394e-2
8	8178244	8070330	NM_003720	PSMG1	0.406443	1.691186e-5	5.860635e-1	7.325794e-2
9	8178244	8067382	NM_002792	PSMA7	0.403239	1.998529e-5	6.925704e-1	7.695226e-2
10	8178244	8030199	NM_003089	SNRNP70	0.402762	2.048472e-5	7.098776e-1	7.098776e-2
11	8178244	7964522	NM_000075	CDK4	0.402452	2.081668e-5	7.213812e-1	6.558011e-2
12	8178244	8009784	NM_015971	MRPS7	0.399931	2.370244e-5	8.213843e-1	6.844869e-2
13	8178244	8124994	NM_021184	C6orf47	0.397835	2.638284e-5	9.142709e-1	7.032853e-2
14	8178244	8032455	NM_018049	PLEKHJ1	0.397249	2.718221e-5	9.419724e-1	6.728374e-2
15	8118634	8009784	NM_015971	MRPS7	0.394297	3.156269e-5	1.093773e+0	7.291822e-2
16	8118634	8070330	NM_003720	PSMG1	0.393053	3.359943e-5	1.164355e+0	7.277217e-2
17	8178244	7916135	NM_032449	CC2D1B	0.390368	3.842145e-5	1.331457e+0	7.832100e-2
18	8178244	8032863	NM_019107	C19orf10	0.389913	3.930100e-5	1.361937e+0	7.566316e-2
19	8178244	7937698	NM_001005922	KRTAP5-1	-0.389360	4.039369e-5	1.399803e+0	7.367383e-2
20	8178244	8044649	NR_024077	WASH2P	0.386056	4.754325e-5	1.647564e+0	8.237819e-2
21	8178244	7935810	NM_005004	NDUFB8	0.385443	4.899116e-5	1.697740e+0	8.084475e-2
22	8178244	8148728	NM_001916	CYC1	0.385164	4.966547e-5	1.721107e+0	7.823215e-2
23	8178244	7941879	NM_198517	TBC1D10C	0.383150	5.479008e-5	1.898695e+0	8.255197e-2
24	8178244	8029969	NM_003009	SEPW1	0.382912	5.542566e-5	1.920721e+0	8.003003e-2
25	8178244	8158544	NM_014064	METTL11A	0.382717	5.595448e-5	1.939047e+0	7.756186e-2
26	8178244	8053187	NM_032673	PCGF1	0.381759	5.861307e-5	2.031177e+0	7.812221e-2
27	8178244	8025500	NM_024292	UBL5	0.380418	6.253186e-5	2.166979e+0	8.025848e-2
28	8178244	7945349	NM_016526	BET1L	0.378768	6.768885e-5	2.345690e+0	8.377463e-2
29	8178244	7982514	ENST00000384363		-0.378601	6.823299e-5	2.364546e+0	8.153607e-2
30	8178244	8002102	AF090894		-0.378034	7.010978e-5	2.429584e+0	8.098614e-2
31	8118634	8130003	NM_031287	SF3B5	0.377104	7.328980e-5	2.539785e+0	8.192854e-2
32	8118634	7992402	NM_004548	NDUFB10	0.375472	7.919965e-5	2.744585e+0	8.576827e-2
33	8178244	8036483	NM_033557	YIF1B	0.374678	8.223582e-5	2.849800e+0	8.635758e-2
34	8178244	7997702	NM_001861	COX4I1	0.374017	8.484138e-5	2.940093e+0	8.647332e-2
35	8178244	8037642	NM_177542	SNRPD2	0.371241	9.665465e-5	3.349470e+0	9.569914e-2
36	8118634	8053187	NM_032673	PCGF1	0.370674	9.924755e-5	3.439325e+0	9.553680e-2
37	8178244	8069026	NM_004649	C21orf33	0.369492	1.048644e-4	3.633972e+0	9.821546e-2
38	8118634	8037642	NM_177542	SNRPD2	0.369140	1.065955e-4	3.693961e+0	9.720950e-2
39	8178244	7994269	NM_024773	JMJD5	0.369060	1.069932e-4	3.707743e+0	9.507034e-2
40	8178244	7942168	NM_003824	FADD	0.368842	1.080796e-4	3.745390e+0	9.363474e-2
41	8178244	7985562	NR_003246	GOLGA6L5	0.368763	1.084744e-4	3.759072e+0	9.168469e-2
42	8178244	7991989	NM_138769	RHOT2	0.367304	1.160486e-4	4.021549e+0	9.575118e-2
43	8178244	8161857	NM_018339	RFK	0.364381	1.327259e-4	4.599484e+0	1.069648e-1
44	8178244	7986541	NR_003659	WASH3P	0.364319	1.331036e-4	4.612571e+0	1.048312e-1
45	8178244	7911359	NM_015658	NOC2L	0.364306	1.331802e-4	4.615228e+0	1.025606e-1
46	8178244	8004832	NM_201520	SLC25A35	0.362720	1.431658e-4	4.961268e+0	1.078537e-1
47	8178244	8058914	NM_001087	AAMP	0.362548	1.442894e-4	5.000205e+0	1.063873e-1
48	8178244	8135275			-0.362416	1.451555e-4	5.030220e+0	1.047962e-1
49	8178244	8159609	NM_003731	SSNA1	0.360901	1.554702e-4	5.387663e+0	1.099523e-1
50	8178244	8099029	NM_024309	TNIP2	0.360856	1.557860e-4	5.398607e+0	1.079721e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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