[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7570	8124994	NM_021184	C6orf47		chromosome 6 open reading frame 47
7758	8178552	NM_021184	C6orf47		chromosome 6 open reading frame 47
7759	8179808	NM_021184	C6orf47		chromosome 6 open reading frame 47

Fetching correlation data, please wait...
Getting list of correlations for id 7570.
Getting list of p-values for id 7570.
1 of 3 done.
Getting list of correlations for id 7758.
Getting list of p-values for id 7758.
2 of 3 done.
Getting list of correlations for id 7759.
Getting list of p-values for id 7759.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.209 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178552	8179808	NM_021184	C6orf47	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179808	8178552	NM_021184	C6orf47	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8124994	8179808	NM_021184	C6orf47	0.985302	7.129124e-81	3.705790e-76	1.235263e-76
4	8179808	8124994	NM_021184	C6orf47	0.985302	7.129124e-81	3.705790e-76	9.264475e-77
5	8178552	8124994	NM_021184	C6orf47	0.985302	7.129124e-81	3.705790e-76	7.411580e-77
6	8124994	8178552	NM_021184	C6orf47	0.985302	7.129124e-81	3.705790e-76	6.176316e-77
7	8124994	8099029	NM_024309	TNIP2	0.639340	2.132788e-13	1.108644e-8	1.583778e-9
8	8179808	8099029	NM_024309	TNIP2	0.624842	1.050135e-12	5.458709e-8	6.823386e-9
9	8178552	8099029	NM_024309	TNIP2	0.624842	1.050135e-12	5.458709e-8	6.065232e-9
10	8124994	8159609	NM_003731	SSNA1	0.611548	4.219366e-12	2.193268e-7	2.193268e-8
11	8124994	8086201	NM_001607	ACAA1	0.607286	6.501299e-12	3.379440e-7	3.072219e-8
12	8124994	8037071	NM_006423	RABAC1	0.605531	7.753070e-12	4.030123e-7	3.358436e-8
13	8124994	8032804	NM_003025	SH3GL1	0.604296	8.770450e-12	4.558968e-7	3.506898e-8
14	8124994	8032455	NM_018049	PLEKHJ1	0.603540	9.455621e-12	4.915126e-7	3.510804e-8
15	8124994	8032863	NM_019107	C19orf10	0.601347	1.174748e-11	6.106458e-7	4.070972e-8
16	8178552	8032455	NM_018049	PLEKHJ1	0.599965	1.345851e-11	6.995869e-7	4.372418e-8
17	8179808	8032455	NM_018049	PLEKHJ1	0.599965	1.345851e-11	6.995869e-7	4.115217e-8
18	8124994	8025500	NM_024292	UBL5	0.598680	1.526387e-11	7.934311e-7	4.407951e-8
19	8124994	7941879	NM_198517	TBC1D10C	0.596738	1.844066e-11	9.585639e-7	5.045073e-8
20	8124994	7949776	NM_020441	CORO1B	0.596220	1.939060e-11	1.007943e-6	5.039714e-8
21	8178552	8037071	NM_006423	RABAC1	0.593881	2.429869e-11	1.263070e-6	6.014621e-8
22	8179808	8037071	NM_006423	RABAC1	0.593881	2.429869e-11	1.263070e-6	5.741229e-8
23	8179808	8032863	NM_019107	C19orf10	0.592386	2.804369e-11	1.457739e-6	6.337996e-8
24	8178552	8032863	NM_019107	C19orf10	0.592386	2.804369e-11	1.457739e-6	6.073913e-8
25	8178552	8032804	NM_003025	SH3GL1	0.592113	2.878534e-11	1.496291e-6	5.985163e-8
26	8179808	8032804	NM_003025	SH3GL1	0.592113	2.878534e-11	1.496291e-6	5.754964e-8
27	8178552	8086201	NM_001607	ACAA1	0.592001	2.909562e-11	1.512420e-6	5.601554e-8
28	8179808	8086201	NM_001607	ACAA1	0.592001	2.909562e-11	1.512420e-6	5.401499e-8
29	8179808	8159609	NM_003731	SSNA1	0.589820	3.580353e-11	1.861103e-6	6.417597e-8
30	8178552	8159609	NM_003731	SSNA1	0.589820	3.580353e-11	1.861103e-6	6.203677e-8
31	8178552	8025500	NM_024292	UBL5	0.587790	4.336750e-11	2.254286e-6	7.271890e-8
32	8179808	8025500	NM_024292	UBL5	0.587790	4.336750e-11	2.254286e-6	7.044644e-8
33	8179808	7949776	NM_020441	CORO1B	0.583814	6.289242e-11	3.269211e-6	9.906700e-8
34	8178552	7949776	NM_020441	CORO1B	0.583814	6.289242e-11	3.269211e-6	9.615326e-8
35	8124994	8087405	NM_201397	GPX1	0.580666	8.411264e-11	4.372259e-6	1.249217e-7
36	8124994	8042917	NM_001381	DOK1	0.579209	9.612807e-11	4.996833e-6	1.388009e-7
37	8124994	8071737	NM_002415	MIF	0.579204	9.616930e-11	4.998976e-6	1.351075e-7
38	8178552	7931379	NM_002412	MGMT	0.573219	1.653013e-10	8.592526e-6	2.261191e-7
39	8179808	7931379	NM_002412	MGMT	0.573219	1.653013e-10	8.592526e-6	2.203212e-7
40	8124994	8080198	NM_144641	PPM1M	0.571466	1.933211e-10	1.004902e-5	2.512256e-7
41	8124994	8038792	NM_001985	ETFB	0.571053	2.005590e-10	1.042526e-5	2.542746e-7
42	8179808	7941879	NM_198517	TBC1D10C	0.571000	2.015116e-10	1.047477e-5	2.493993e-7
43	8178552	7941879	NM_198517	TBC1D10C	0.571000	2.015116e-10	1.047477e-5	2.435994e-7
44	8179808	8024660	NM_006339	HMG20B	0.569069	2.391162e-10	1.242950e-5	2.824886e-7
45	8178552	8024660	NM_006339	HMG20B	0.569069	2.391162e-10	1.242950e-5	2.762111e-7
46	8124994	8118655	NM_003782	B3GALT4	0.566658	2.956422e-10	1.536778e-5	3.340822e-7
47	8124994	8178264	NM_003782	B3GALT4	0.566658	2.956422e-10	1.536778e-5	3.269740e-7
48	8124994	8179555	NM_003782	B3GALT4	0.566658	2.956422e-10	1.536778e-5	3.201621e-7
49	8124994	7931379	NM_002412	MGMT	0.566101	3.103989e-10	1.613484e-5	3.292825e-7
50	8179808	8080198	NM_144641	PPM1M	0.563612	3.855783e-10	2.004275e-5	4.008550e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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