[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7086	8161857	NM_018339	RFK		riboflavin kinase

Fetching correlation data, please wait...
Getting list of correlations for id 7086.
Getting list of p-values for id 7086.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8161857	7931379	NM_002412	MGMT	0.585717	5.267576e-11	9.127130e-7	9.127130e-7
2	8161857	8110861	NM_032479	MRPL36	0.566503	2.996855e-10	5.192651e-6	2.596326e-6
3	8161857	7921786	NM_012394	PFDN2	0.557502	6.516050e-10	1.129036e-5	3.763453e-6
4	8161857	8052370	ENST00000365474		0.556573	7.050678e-10	1.221671e-5	3.054177e-6
5	8161857	8024660	NM_006339	HMG20B	0.554933	8.099127e-10	1.403336e-5	2.806672e-6
6	8161857	8032863	NM_019107	C19orf10	0.550989	1.126924e-9	1.952621e-5	3.254368e-6
7	8161857	7910387	NM_021205	RHOU	0.550753	1.149185e-9	1.991192e-5	2.844560e-6
8	8161857	7979127			0.546642	1.613708e-9	2.796072e-5	3.495089e-6
9	8161857	7954434	ENST00000410223		0.543585	2.071057e-9	3.588520e-5	3.987245e-6
10	8161857	8025506	NM_006221	PIN1	0.543485	2.087907e-9	3.617717e-5	3.617717e-6
11	8161857	8019010	NM_020649	CBX8	0.542453	2.270044e-9	3.933304e-5	3.575731e-6
12	8161857	8026024	NM_004317	ASNA1	0.539078	2.978248e-9	5.160411e-5	4.300342e-6
13	8161857	8032761	NM_030662	MAP2K2	0.538909	3.018907e-9	5.230859e-5	4.023738e-6
14	8161857	8050763	ENST00000380834		0.538460	3.129270e-9	5.422086e-5	3.872919e-6
15	8161857	8159687	NM_032477	MRPL41	0.532690	4.939188e-9	8.558131e-5	5.705420e-6
16	8161857	8115918	NM_007097	CLTB	0.531438	5.447596e-9	9.439050e-5	5.899406e-6
17	8161857	7901445	BC057844		0.531072	5.605288e-9	9.712282e-5	5.713107e-6
18	8161857	8165622	NM_138462	ZMYND19	0.528710	6.733696e-9	1.166747e-4	6.481930e-6
19	8161857	8033465	NM_006351	TIMM44	0.525379	8.700850e-9	1.507596e-4	7.934717e-6
20	8161857	8141762	NM_006234	POLR2J	0.524897	9.027567e-9	1.564207e-4	7.821033e-6
21	8161857	8103023	BC035666		0.521539	1.165190e-8	2.018925e-4	9.613928e-6
22	8161857	7941900	NM_003952	RPS6KB2	0.521014	1.212326e-8	2.100597e-4	9.548167e-6
23	8161857	7906469	NM_017823	DUSP23	0.519450	1.363755e-8	2.362978e-4	1.027382e-5
24	8161857	8039491	NM_014501	UBE2S	0.518072	1.512072e-8	2.619967e-4	1.091653e-5
25	8161857	8029969	NM_003009	SEPW1	0.512901	2.218535e-8	3.844055e-4	1.537622e-5
26	8161857	7995350			0.512388	2.303666e-8	3.991563e-4	1.535216e-5
27	8161857	7943124			0.509715	2.800502e-8	4.852429e-4	1.797196e-5
28	8161857	7976744	NM_003403	YY1	0.507972	3.178048e-8	5.506604e-4	1.966644e-5
29	8161857	7938685	ENST00000358708		0.507515	3.284816e-8	5.691600e-4	1.962621e-5
30	8161857	8126653	NM_032111	MRPL14	0.506944	3.423139e-8	5.931273e-4	1.977091e-5
31	8161857	8014916	NM_139280	ORMDL3	0.506595	3.510203e-8	6.082128e-4	1.961977e-5
32	8161857	8159541	BC002613	C9orf142	0.505642	3.759512e-8	6.514106e-4	2.035658e-5
33	8161857	8037355	NM_182498	ZNF428	0.505070	3.916816e-8	6.786666e-4	2.056566e-5
34	8161857	8176482	ENST00000455422		0.505009	3.934103e-8	6.816621e-4	2.004888e-5
35	8161857	8034075	NM_001800	CDKN2D	0.499300	5.901188e-8	1.022499e-3	2.921425e-5
36	8161857	7986246	ENST00000380748		0.498475	6.253479e-8	1.083540e-3	3.009834e-5
37	8161857	8158123	NM_004957	FPGS	0.498136	6.403980e-8	1.109618e-3	2.998967e-5
38	8161857	8066567	ENST00000447334		0.496575	7.142346e-8	1.237554e-3	3.256722e-5
39	8161857	8032284	NM_006830	UQCR11	0.496279	7.291384e-8	1.263378e-3	3.239431e-5
40	8161857	8100782			0.494492	8.255424e-8	1.430417e-3	3.576043e-5
41	8161857	8096899	NM_152400	C4orf32	0.494354	8.334817e-8	1.444174e-3	3.522375e-5
42	8161857	8070811	NM_006936	SUMO3	0.494093	8.487205e-8	1.470578e-3	3.501376e-5
43	8161857	8032455	NM_018049	PLEKHJ1	0.493915	8.592087e-8	1.488751e-3	3.462212e-5
44	8161857	7911355	NM_177987	TUBB8	0.492219	9.658616e-8	1.673548e-3	3.803519e-5
45	8161857	8025500	NM_024292	UBL5	0.491834	9.918047e-8	1.718500e-3	3.818889e-5
46	8161857	7984985	NM_001038640	GOLGA6A	0.490305	1.101400e-7	1.908395e-3	4.148685e-5
47	8161857	8175537	AK093505	CXorf18	0.490284	1.102990e-7	1.911150e-3	4.066277e-5
48	8161857	7959157	NM_176818	GATC	0.489352	1.175413e-7	2.036638e-3	4.242997e-5
49	8161857	8016508	NM_007241	SNF8	0.489281	1.181145e-7	2.046569e-3	4.176672e-5
50	8161857	8038792	NM_001985	ETFB	0.487928	1.294923e-7	2.243713e-3	4.487426e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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