[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3474	8038427	NM_021733	TSKS		testis-specific serine kinase substrate

Fetching correlation data, please wait...
Getting list of correlations for id 3474.
Getting list of p-values for id 3474.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038427	7987701	NM_016642	SPTBN5	0.710425	2.111150e-17	3.657990e-13	3.657990e-13
2	8038427	8003875	NM_001124758	SPNS2	0.703592	5.763553e-17	9.986508e-13	4.993254e-13
3	8038427	8141648	NM_015831	ACHE	0.702377	6.870220e-17	1.190403e-12	3.968010e-13
4	8038427	8058997	NM_017431	PRKAG3	0.701965	7.290279e-17	1.263187e-12	3.157967e-13
5	8038427	7920928	NM_024897	PAQR6	0.701421	7.882936e-17	1.365876e-12	2.731753e-13
6	8038427	8155083	NM_001216	CA9	0.701103	8.251151e-17	1.429677e-12	2.382795e-13
7	8038427	8016320	NM_203400	RPRML	0.700605	8.860501e-17	1.535259e-12	2.193227e-13
8	8038427	8086810	NM_003074	SMARCC1	-0.698743	1.155404e-16	2.001969e-12	2.502461e-13
9	8038427	8010629	NM_199287	CCDC137	0.697488	1.380264e-16	2.391584e-12	2.657315e-13
10	8038427	8163548	NM_138424	KIF12	0.697423	1.393063e-16	2.413760e-12	2.413760e-13
11	8038427	8003719	NM_001098202	HIC1	0.697266	1.424118e-16	2.467570e-12	2.243245e-13
12	8038427	8079021	NM_001904	CTNNB1	-0.697088	1.460349e-16	2.530347e-12	2.108623e-13
13	8038427	8060660	NM_052970	HSPA12B	0.696433	1.601524e-16	2.774961e-12	2.134586e-13
14	8038427	8084219	NM_017644	KLHL24	-0.695301	1.877468e-16	3.253088e-12	2.323635e-13
15	8038427	7918474	NM_178454	DRAM2	-0.693040	2.572742e-16	4.457790e-12	2.971860e-13
16	8038427	7939434	NM_018259	TTC17	-0.691416	3.220808e-16	5.580694e-12	3.487933e-13
17	8038427	7928872	NM_003087	SNCG	0.691365	3.243513e-16	5.620035e-12	3.305903e-13
18	8038427	8075934	NM_014550	CARD10	0.690889	3.463208e-16	6.000700e-12	3.333722e-13
19	8038427	8032312	NM_138813	ATP8B3	0.690115	3.851328e-16	6.673196e-12	3.512209e-13
20	8038427	7974771	NM_022495	C14orf135	-0.686081	6.666283e-16	1.155067e-11	5.775334e-13
21	8038427	7922823	NM_025191	EDEM3	-0.685849	6.878414e-16	1.191823e-11	5.675347e-13
22	8038427	8042119	NM_022894	PAPOLG	-0.683753	9.113705e-16	1.579132e-11	7.177871e-13
23	8038427	8090639	NM_014602	PIK3R4	-0.683346	9.622761e-16	1.667336e-11	7.249286e-13
24	8038427	8161533	NM_001085476	FOXD4L6	0.682136	1.130360e-15	1.958575e-11	8.160728e-13
25	8038427	8004372	NM_003985	TNK1	0.681862	1.172311e-15	2.031263e-11	8.125052e-13
26	8038427	7967969	NM_138284	IL17D	0.681743	1.190867e-15	2.063415e-11	7.936213e-13
27	8038427	8153459	NM_023078	PYCRL	0.681465	1.235582e-15	2.140893e-11	7.929234e-13
28	8038427	7983663	NM_005154	USP8	-0.680691	1.368794e-15	2.371709e-11	8.470389e-13
29	8038427	7897890	NM_015378	VPS13D	-0.680678	1.371226e-15	2.375924e-11	8.192842e-13
30	8038427	8149612	NM_021020	LZTS1	0.679593	1.581942e-15	2.741032e-11	9.136772e-13
31	8038427	8155661	NM_199135	FOXD4L3	0.678744	1.768503e-15	3.064285e-11	9.884791e-13
32	8038427	8008201	NM_002507	NGFR	0.678173	1.905652e-15	3.301923e-11	1.031851e-12
33	8038427	8125568	NM_080680	COL11A2	0.677846	1.988962e-15	3.446274e-11	1.044325e-12
34	8038427	8116033	NM_000505	F12	0.677761	2.011153e-15	3.484725e-11	1.024919e-12
35	8038427	7920744	NM_000298	PKLR	0.677269	2.144370e-15	3.715550e-11	1.061586e-12
36	8038427	7949033	NM_014067	MACROD1	0.676299	2.432532e-15	4.214849e-11	1.170791e-12
37	8038427	8159211	NM_004108	FCN2	0.675556	2.678418e-15	4.640894e-11	1.254296e-12
38	8038427	7998878	NM_022119	PRSS22	0.675408	2.730386e-15	4.730939e-11	1.244984e-12
39	8038427	8024347	NM_079834	SCAMP4	0.674405	3.107698e-15	5.384709e-11	1.380695e-12
40	8038427	7937560	NM_002457	MUC2	0.673936	3.300939e-15	5.719538e-11	1.429884e-12
41	8038427	8043114	NM_031283	TCF7L1	0.673659	3.420638e-15	5.926939e-11	1.445595e-12
42	8038427	8099926	NM_001100399	PDS5A	-0.673632	3.432767e-15	5.947956e-11	1.416180e-12
43	8038427	7896985	NM_080875	MIB2	0.672952	3.745348e-15	6.489565e-11	1.509201e-12
44	8038427	7914042	NM_004672	MAP3K6	0.672870	3.784946e-15	6.558176e-11	1.490495e-12
45	8038427	8125072	NM_025258	C6orf27	0.672467	3.985469e-15	6.905621e-11	1.534583e-12
46	8038427	7968260	NM_145657	GSX1	0.671890	4.290256e-15	7.433726e-11	1.616027e-12
47	8038427	8064108	BC000912	C20orf195	0.671821	4.328017e-15	7.499155e-11	1.595565e-12
48	8038427	7947969	NM_015308	FNBP4	-0.671209	4.679092e-15	8.107463e-11	1.689055e-12
49	8038427	7935983	NM_005029	PITX3	0.670917	4.856132e-15	8.414220e-11	1.717188e-12
50	8038427	7947991	NM_015231	NUP160	-0.670749	4.961181e-15	8.596239e-11	1.719248e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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