[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6041	7952004	NM_174934	SCN4B		sodium channel, voltage-gated, type IV, beta

Fetching correlation data, please wait...
Getting list of correlations for id 6041.
Getting list of p-values for id 6041.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7952004	8075200	NM_012265	RHBDD3	0.782236	6.753400e-23	1.170162e-18	1.170162e-18
2	7952004	8156415	NM_006648	WNK2	0.782030	7.049853e-23	1.221528e-18	6.107640e-19
3	7952004	7935983	NM_005029	PITX3	0.775027	2.959331e-22	5.127633e-18	1.709211e-18
4	7952004	7997801	NM_013278	IL17C	0.774620	3.211783e-22	5.565056e-18	1.391264e-18
5	7952004	8142971	NM_138693	KLF14	0.773220	4.249153e-22	7.362507e-18	1.472501e-18
6	7952004	7995310	ENST00000319817		0.770517	7.256845e-22	1.257394e-17	2.095656e-18
7	7952004	8036151	NM_144617	HSPB6	0.768356	1.107075e-21	1.918228e-17	2.740326e-18
8	7952004	8112072	NM_021147	CCNO	0.764904	2.154102e-21	3.732412e-17	4.665515e-18
9	7952004	8066498	NM_003833	MATN4	0.764436	2.355376e-21	4.081161e-17	4.534623e-18
10	7952004	8005328	NM_016239	MYO15A	0.763978	2.570012e-21	4.453059e-17	4.453059e-18
11	7952004	8162283	NM_004560	ROR2	0.762507	3.396875e-21	5.885765e-17	5.350695e-18
12	7952004	8008228	NM_138281	DLX4	0.761833	3.857077e-21	6.683157e-17	5.569298e-18
13	7952004	8125234	NM_019105	TNXB	0.761134	4.398457e-21	7.621207e-17	5.862467e-18
14	7952004	8064014	NM_022082	SLC17A9	0.757633	8.437517e-21	1.461969e-16	1.044263e-17
15	7952004	8114550	NM_004883	NRG2	0.756309	1.076147e-20	1.864641e-16	1.243094e-17
16	7952004	8136080	NM_005631	SMO	0.754609	1.467956e-20	2.543527e-16	1.589705e-17
17	7952004	8143941	NM_198285	WDR86	0.753113	1.924707e-20	3.334940e-16	1.961729e-17
18	7952004	7941890	NM_020811	CARNS1	0.750712	2.961416e-20	5.131246e-16	2.850692e-17
19	7952004	8010287	NM_030968	C1QTNF1	0.750627	3.006643e-20	5.209610e-16	2.741900e-17
20	7952004	7914361	NM_001856	COL16A1	0.750332	3.169161e-20	5.491205e-16	2.745603e-17
21	7952004	8175815	NM_001039582	PNCK	0.750204	3.242165e-20	5.617700e-16	2.675095e-17
22	7952004	8032699	NM_015174	ZFR2	0.749935	3.401266e-20	5.893373e-16	2.678806e-17
23	7952004	8028806	NM_020971	SPTBN4	0.749795	3.486682e-20	6.041374e-16	2.626684e-17
24	7952004	8003635	NM_172367	TUSC5	0.749248	3.842185e-20	6.657355e-16	2.773898e-17
25	7952004	8160849	NM_001017363	ARID3C	0.748858	4.116786e-20	7.133155e-16	2.853262e-17
26	7952004	8060134	NM_004321	KIF1A	0.748401	4.463645e-20	7.734158e-16	2.974676e-17
27	7952004	8032034	NM_001136263	C2CD4C	0.747983	4.804789e-20	8.325257e-16	3.083429e-17
28	7952004	8016168	NM_133373	PLCD3	0.747967	4.818175e-20	8.348451e-16	2.981590e-17
29	7952004	7966189	NM_213596	FOXN4	0.747195	5.519216e-20	9.563146e-16	3.297636e-17
30	7952004	8032197	NM_152769	C19orf26	0.746906	5.806001e-20	1.006006e-15	3.353353e-17
31	7952004	7898616	NM_022819	PLA2G2F	0.746777	5.938842e-20	1.029023e-15	3.319430e-17
32	7952004	8025375	NM_005624	CCL25	0.745379	7.581396e-20	1.313629e-15	4.105089e-17
33	7952004	7913450	NM_005529	HSPG2	0.744771	8.426348e-20	1.460033e-15	4.424344e-17
34	7952004	7912031	NM_019089	HES2	0.743849	9.884102e-20	1.712618e-15	5.037113e-17
35	7952004	8049942	NM_080741	NEU4	0.743834	9.910733e-20	1.717233e-15	4.906379e-17
36	7952004	7914260	NM_002379	MATN1	0.742100	1.335597e-19	2.314188e-15	6.428301e-17
37	7952004	8026407	NM_033025	SYDE1	0.741912	1.379446e-19	2.390167e-15	6.459910e-17
38	7952004	8049536	NM_001137550	LRRFIP1	0.741688	1.433372e-19	2.483603e-15	6.535798e-17
39	7952004	7983663	NM_005154	USP8	-0.741067	1.593654e-19	2.761325e-15	7.080320e-17
40	7952004	8014269	NM_139285	GAS2L2	0.740339	1.804161e-19	3.126069e-15	7.815173e-17
41	7952004	7949344	NM_005468	NAALADL1	0.739474	2.089371e-19	3.620254e-15	8.829888e-17
42	7952004	7942123	NM_053056	CCND1	0.739221	2.180926e-19	3.778890e-15	8.997357e-17
43	7952004	8075865	NM_153609	TMPRSS6	0.738720	2.373465e-19	4.112502e-15	9.563959e-17
44	7952004	8058458	ENST00000327138		0.738403	2.504049e-19	4.338766e-15	9.860832e-17
45	7952004	8107897	NM_003687	PDLIM4	0.738268	2.561476e-19	4.438270e-15	9.862823e-17
46	7952004	7896865	NM_153254	TTLL10	0.737146	3.092856e-19	5.358991e-15	1.164998e-16
47	7952004	7927367	NM_001040084	ANXA8	0.737143	3.094426e-19	5.361711e-15	1.140790e-16
48	7952004	7927307	NM_001630	ANXA8L2	0.737127	3.103013e-19	5.376591e-15	1.120123e-16
49	7952004	8133704	NM_001110199	SRRM3	0.736693	3.336522e-19	5.781191e-15	1.179835e-16
50	7952004	8038093	NM_001080434	LMTK3	0.736666	3.351530e-19	5.807196e-15	1.161439e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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