[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1098	7979505	NM_005982	SIX1		SIX homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 1098.
Getting list of p-values for id 1098.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.554 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7979505	7983663	NM_005154	USP8	-0.698508	1.194681e-16	2.070024e-12	2.070024e-12
2	7979505	7912031	NM_019089	HES2	0.680708	1.365800e-15	2.366521e-11	1.183261e-11
3	7979505	8067820	BC024764	IQSEC3	0.674165	3.205076e-15	5.553435e-11	1.851145e-11
4	7979505	7939365	NM_014344	FJX1	0.673170	3.642136e-15	6.310730e-11	1.577682e-11
5	7979505	8153876	NM_025251	ARHGAP39	0.671156	4.711028e-15	8.162798e-11	1.632560e-11
6	7979505	7952893	BC024764	IQSEC3	0.669063	6.141612e-15	1.064157e-10	1.773595e-11
7	7979505	8064031	NM_139317	BIRC7	0.668462	6.624662e-15	1.147855e-10	1.639793e-11
8	7979505	7910706	NM_006499	LGALS8	-0.667830	7.172851e-15	1.242840e-10	1.553550e-11
9	7979505	8054804	NM_019044	CCDC93	-0.666187	8.810637e-15	1.526619e-10	1.696244e-11
10	7979505	7949645	NM_207340	ZDHHC24	0.666121	8.883363e-15	1.539220e-10	1.539220e-11
11	7979505	7977418	NM_001134875	C14orf80	0.664555	1.079430e-14	1.870328e-10	1.700299e-11
12	7979505	8155661	NM_199135	FOXD4L3	0.663990	1.157776e-14	2.006079e-10	1.671733e-11
13	7979505	7976783	NM_003836	DLK1	0.663218	1.273700e-14	2.206940e-10	1.697646e-11
14	7979505	8098512	NM_021942	C4orf41	-0.661812	1.514174e-14	2.623609e-10	1.874007e-11
15	7979505	8064111	NM_032957	RTEL1	0.661620	1.550329e-14	2.686255e-10	1.790837e-11
16	7979505	8081375	NM_145037	FAM55C	-0.659161	2.093157e-14	3.626813e-10	2.266758e-11
17	7979505	7967641	NM_133448	TMEM132D	0.658518	2.263106e-14	3.921284e-10	2.306637e-11
18	7979505	8092836	NM_001080513	CPN2	0.658193	2.353963e-14	4.078712e-10	2.265951e-11
19	7979505	8120022	NM_001253	CDC5L	-0.657752	2.482795e-14	4.301939e-10	2.264178e-11
20	7979505	8116439	NM_052863	SCGB3A1	0.657162	2.666201e-14	4.619727e-10	2.309863e-11
21	7979505	8039524	NM_152600	ZNF579	0.656328	2.947832e-14	5.107708e-10	2.432242e-11
22	7979505	7896761	NM_152486	SAMD11	0.655835	3.127712e-14	5.419387e-10	2.463358e-11
23	7979505	7973745	NM_005249	FOXG1	0.655168	3.387927e-14	5.870260e-10	2.552287e-11
24	7979505	8133704	NM_001110199	SRRM3	0.654893	3.501262e-14	6.066636e-10	2.527765e-11
25	7979505	7937443	NM_022772	EPS8L2	0.654252	3.779862e-14	6.549366e-10	2.619747e-11
26	7979505	7992271	NM_016111	TELO2	0.653785	3.995924e-14	6.923737e-10	2.662976e-11
27	7979505	8024995	NM_004558	NRTN	0.652481	4.665487e-14	8.083889e-10	2.994033e-11
28	7979505	7941457	NM_006848	CCDC85B	0.652479	4.666655e-14	8.085914e-10	2.887826e-11
29	7979505	7955305	NM_001652	AQP6	0.651492	5.244732e-14	9.087547e-10	3.133637e-11
30	7979505	8029693	NM_006732	FOSB	0.651081	5.505136e-14	9.538749e-10	3.179583e-11
31	7979505	7949857	NM_181843	NUDT8	0.650883	5.635392e-14	9.764444e-10	3.149821e-11
32	7979505	8042119	NM_022894	PAPOLG	-0.650591	5.831950e-14	1.010502e-9	3.157819e-11
33	7979505	8090577	NM_003925	MBD4	-0.650143	6.147825e-14	1.065234e-9	3.227981e-11
34	7979505	8177217	NR_001543	TTTY14	0.649271	6.809462e-14	1.179875e-9	3.470222e-11
35	7979505	8115524	NM_014666	CLINT1	-0.649035	7.000240e-14	1.212932e-9	3.465519e-11
36	7979505	8038150	NM_182574	MAMSTR	0.648935	7.082386e-14	1.227165e-9	3.408792e-11
37	7979505	8124868	NM_001105564	CCHCR1	0.648660	7.314002e-14	1.267297e-9	3.425127e-11
38	7979505	8045381	NM_058241	CCNT2	-0.647885	8.006110e-14	1.387219e-9	3.650576e-11
39	7979505	8038288	NM_033377	CGB1	0.647665	8.213646e-14	1.423178e-9	3.649175e-11
40	7979505	7977674	NM_007192	SUPT16H	-0.647595	8.280968e-14	1.434843e-9	3.587108e-11
41	7979505	8093826	NM_000683	ADRA2C	0.647519	8.354601e-14	1.447602e-9	3.530736e-11
42	7979505	7905490	NM_178434	LCE3C	0.647464	8.407725e-14	1.456807e-9	3.468587e-11
43	7979505	8171786	NM_153270	KLHL34	0.647056	8.816444e-14	1.527625e-9	3.552617e-11
44	7979505	8110382	NM_030567	PRR7	0.646129	9.816041e-14	1.700825e-9	3.865512e-11
45	7979505	7906284	NM_144702	C1orf92	0.646017	9.944242e-14	1.723039e-9	3.828975e-11
46	7979505	8104998	NM_018034	WDR70	-0.645864	1.012243e-13	1.753913e-9	3.812854e-11
47	7979505	8086810	NM_003074	SMARCC1	-0.645783	1.021686e-13	1.770275e-9	3.766543e-11
48	7979505	8001046	NM_001136509	ZNF843	0.645280	1.082878e-13	1.876303e-9	3.908964e-11
49	7979505	8005328	NM_016239	MYO15A	0.645215	1.091044e-13	1.890452e-9	3.858065e-11
50	7979505	7945462	NM_004031	IRF7	0.644414	1.196405e-13	2.073011e-9	4.146022e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation