[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5273	8029693	NM_006732	FOSB		FBJ murine osteosarcoma viral oncogene homolog B

Fetching correlation data, please wait...
Getting list of correlations for id 5273.
Getting list of p-values for id 5273.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.151 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8029693	7958577	NM_032829	C12orf34	0.837370	8.969191e-29	1.554092e-24	1.554092e-24
2	8029693	7935983	NM_005029	PITX3	0.829568	8.121624e-28	1.407234e-23	7.036169e-24
3	8029693	8074131	NM_001080420	SHANK3	0.826681	1.784207e-27	3.091495e-23	1.030498e-23
4	8029693	8121209	NM_005604	POU3F2	0.824428	3.265100e-27	5.657438e-23	1.414359e-23
5	8029693	8030181	NM_033378	CGB2	0.814952	3.784160e-26	6.556815e-22	1.311363e-22
6	8029693	7973745	NM_005249	FOXG1	0.811837	8.214297e-26	1.423291e-21	2.372152e-22
7	8029693	8137330	ENST00000356058		0.810257	1.210103e-25	2.096746e-21	2.995351e-22
8	8029693	7952893	BC024764	IQSEC3	0.808452	1.875907e-25	3.250385e-21	4.062981e-22
9	8029693	8032088	NM_214710	PRSSL1	0.807723	2.236806e-25	3.875714e-21	4.306349e-22
10	8029693	7995310	ENST00000319817		0.807167	2.555965e-25	4.428721e-21	4.428721e-22
11	8029693	8098740	NM_033178	DUX4	0.806369	3.093612e-25	5.360302e-21	4.873002e-22
12	8029693	7898556	NM_001040125	PQLC2	0.805518	3.788272e-25	6.563940e-21	5.469950e-22
13	8029693	8038299	NM_033142	CGB7	0.805039	4.244342e-25	7.354171e-21	5.657054e-22
14	8029693	8067409	NM_005560	LAMA5	0.804397	4.939464e-25	8.558609e-21	6.113292e-22
15	8029693	8030015	NM_012451	SYNGR4	0.804128	5.263674e-25	9.120369e-21	6.080246e-22
16	8029693	7949015	NM_001144936	C11orf95	0.803853	5.614620e-25	9.728452e-21	6.080282e-22
17	8029693	8005328	NM_016239	MYO15A	0.802903	7.016740e-25	1.215791e-20	7.151709e-22
18	8029693	7936882	NM_001146340	NKX1-2	0.802541	7.636072e-25	1.323102e-20	7.350568e-22
19	8029693	8060604	NM_000915	OXT	0.802277	8.120576e-25	1.407052e-20	7.405538e-22
20	8029693	7955019	NM_152641	ARID2	-0.801581	9.548586e-25	1.654483e-20	8.272417e-22
21	8029693	8074063	NM_024866	ADM2	0.801297	1.019988e-24	1.767333e-20	8.415871e-22
22	8029693	8163599	NM_015404	DFNB31	0.801258	1.029084e-24	1.783093e-20	8.104970e-22
23	8029693	8098732	NM_033178	DUX4	0.801072	1.074433e-24	1.861670e-20	8.094217e-22
24	8029693	8133704	NM_001110199	SRRM3	0.800825	1.137727e-24	1.971340e-20	8.213916e-22
25	8029693	8110382	NM_030567	PRR7	0.800737	1.160996e-24	2.011658e-20	8.046634e-22
26	8029693	8153828	NM_003923	FOXH1	0.800703	1.170116e-24	2.027460e-20	7.797923e-22
27	8029693	8133339	NM_001077621	VPS37D	0.800584	1.202854e-24	2.084185e-20	7.719203e-22
28	8029693	7905490	NM_178434	LCE3C	0.800481	1.231684e-24	2.134139e-20	7.621924e-22
29	8029693	8038109	NM_017708	FAM83E	0.800136	1.333612e-24	2.310750e-20	7.968104e-22
30	8029693	8159036	NM_139025	ADAMTS13	0.799828	1.431548e-24	2.480444e-20	8.268146e-22
31	8029693	7998015	NM_032451	SPIRE2	0.799076	1.701289e-24	2.947823e-20	9.509107e-22
32	8029693	7899284	NM_001013642	TRNP1	0.798545	1.920877e-24	3.328303e-20	1.040095e-21
33	8029693	8036252	NM_015526	CLIP3	0.798468	1.954762e-24	3.387017e-20	1.026369e-21
34	8029693	7945162	NM_003658	BARX2	0.797115	2.658446e-24	4.606289e-20	1.354791e-21
35	8029693	7911435	NM_001014980	FAM132A	0.796828	2.836971e-24	4.915620e-20	1.404463e-21
36	8029693	8155942	NM_001013735	FOXB2	0.796718	2.908176e-24	5.038997e-20	1.399721e-21
37	8029693	8164853	NM_020469	ABO	0.796560	3.013789e-24	5.221992e-20	1.411349e-21
38	8029693	7911750	NM_001010926	HES5	0.795270	4.027897e-24	6.979137e-20	1.836615e-21
39	8029693	8032197	NM_152769	C19orf26	0.795228	4.065913e-24	7.045007e-20	1.806412e-21
40	8029693	8039524	NM_152600	ZNF579	0.793625	5.813982e-24	1.007389e-19	2.518471e-21
41	8029693	8153380	NM_001135655	LY6H	0.793610	5.833375e-24	1.010749e-19	2.465241e-21
42	8029693	8029530	NM_000041	APOE	0.793195	6.395796e-24	1.108200e-19	2.638570e-21
43	8029693	7937560	NM_002457	MUC2	0.792561	7.358778e-24	1.275055e-19	2.965245e-21
44	8029693	8039362	NM_178837	C19orf51	0.791461	9.374072e-24	1.624245e-19	3.691467e-21
45	8029693	7994961	NM_001330	CTF1	0.791222	9.878599e-24	1.711665e-19	3.803700e-21
46	8029693	8093826	NM_000683	ADRA2C	0.790369	1.190442e-23	2.062679e-19	4.484085e-21
47	8029693	8125234	NM_019105	TNXB	0.790242	1.223781e-23	2.120445e-19	4.511585e-21
48	8029693	8131087	NM_001080461	UNCX	0.790140	1.251247e-23	2.168035e-19	4.516740e-21
49	8029693	8048460	NM_003936	CDK5R2	0.790111	1.259120e-23	2.181677e-19	4.452402e-21
50	8029693	8032034	NM_001136263	C2CD4C	0.790038	1.279446e-23	2.216896e-19	4.433793e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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