[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5037	8004309	NM_001042	SLC2A4		solute carrier family 2 (facilitated glucose transporter), member 4

Fetching correlation data, please wait...
Getting list of correlations for id 5037.
Getting list of p-values for id 5037.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8004309	8031999	NM_003712	PPAP2C	0.714178	1.201043e-17	2.081048e-13	2.081048e-13
2	8004309	8007259	ENST00000225928		0.706511	3.765828e-17	6.525050e-13	3.262525e-13
3	8004309	7998297	NM_153350	FBXL16	0.704416	5.113579e-17	8.860299e-13	2.953433e-13
4	8004309	7980152	NM_000428	LTBP2	0.688627	4.720112e-16	8.178537e-12	2.044634e-12
5	8004309	7938090	NM_176875	CCKBR	0.684157	8.634032e-16	1.496019e-11	2.992037e-12
6	8004309	8067409	NM_005560	LAMA5	0.683671	9.213400e-16	1.596406e-11	2.660676e-12
7	8004309	7937560	NM_002457	MUC2	0.682486	1.079049e-15	1.869669e-11	2.670955e-12
8	8004309	8110237	NM_133369	UNC5A	0.682082	1.138551e-15	1.972768e-11	2.465960e-12
9	8004309	8049919	NM_152783	D2HGDH	0.681803	1.181566e-15	2.047299e-11	2.274776e-12
10	8004309	8178322	NM_006937	SUMO2	-0.681347	1.255032e-15	2.174594e-11	2.174594e-12
11	8004309	7952752	NM_007037	ADAMTS8	0.677991	1.951508e-15	3.381378e-11	3.073980e-12
12	8004309	8170753	NM_014370	SRPK3	0.675168	2.816429e-15	4.880027e-11	4.066689e-12
13	8004309	7940377	NM_017870	TMEM132A	0.672853	3.793193e-15	6.572465e-11	5.055742e-12
14	8004309	7995332			0.672398	4.020925e-15	6.967056e-11	4.976469e-12
15	8004309	8070269	NM_006052	DSCR3	-0.671809	4.334545e-15	7.510466e-11	5.006977e-12
16	8004309	8001329	NM_004352	CBLN1	0.669588	5.747453e-15	9.958612e-11	6.224133e-12
17	8004309	8174636	NM_006937	SUMO2	-0.669111	6.104258e-15	1.057685e-10	6.221675e-12
18	8004309	8110688	NM_004174	SLC9A3	0.665151	1.002503e-14	1.737037e-10	9.650204e-12
19	8004309	8049670	NM_002081	GPC1	0.664349	1.107368e-14	1.918737e-10	1.009861e-11
20	8004309	8018315	NM_006937	SUMO2	-0.662668	1.362966e-14	2.361611e-10	1.180806e-11
21	8004309	8038109	NM_017708	FAM83E	0.662544	1.383893e-14	2.397871e-10	1.141843e-11
22	8004309	8026735	NM_133644	GTPBP3	0.662171	1.448869e-14	2.510455e-10	1.141116e-11
23	8004309	8163548	NM_138424	KIF12	0.660255	1.831960e-14	3.174237e-10	1.380103e-11
24	8004309	7966189	NM_213596	FOXN4	0.660040	1.880639e-14	3.258583e-10	1.357743e-11
25	8004309	7946354	NM_002315	LMO1	0.658486	2.271775e-14	3.936304e-10	1.574522e-11
26	8004309	8004400	NM_175734	C17orf74	0.658342	2.311647e-14	4.005391e-10	1.540535e-11
27	8004309	8035201	NM_015692	CPAMD8	0.658162	2.362821e-14	4.094061e-10	1.516319e-11
28	8004309	7930996	NM_018117	WDR11	-0.657776	2.475752e-14	4.289735e-10	1.532048e-11
29	8004309	8038362	NM_178449	PTH2	0.657606	2.526954e-14	4.378454e-10	1.509812e-11
30	8004309	8158671	NM_000050	ASS1	0.656995	2.720433e-14	4.713694e-10	1.571231e-11
31	8004309	8094271	NM_025205	MED28	-0.656949	2.735409e-14	4.739642e-10	1.528917e-11
32	8004309	8125568	NM_080680	COL11A2	0.656853	2.767212e-14	4.794748e-10	1.498359e-11
33	8004309	7977033	NM_030943	AMN	0.656282	2.964107e-14	5.135908e-10	1.556336e-11
34	8004309	7897132	NM_022114	PRDM16	0.655342	3.317863e-14	5.748861e-10	1.690842e-11
35	8004309	8098512	NM_021942	C4orf41	-0.652500	4.655021e-14	8.065755e-10	2.304502e-11
36	8004309	8073449	NM_014460	CSDC2	0.652316	4.757693e-14	8.243655e-10	2.289904e-11
37	8004309	8150928	NM_003580	NSMAF	-0.652053	4.908393e-14	8.504772e-10	2.298587e-11
38	8004309	7997735	NM_005250	FOXL1	0.651443	5.275113e-14	9.140189e-10	2.405313e-11
39	8004309	8159734	NM_000718	CACNA1B	0.650370	5.985481e-14	1.037104e-9	2.659242e-11
40	8004309	8075200	NM_012265	RHBDD3	0.650347	6.002137e-14	1.039990e-9	2.599976e-11
41	8004309	7922646	NM_022347	TOR1AIP2	-0.649622	6.535456e-14	1.132398e-9	2.761947e-11
42	8004309	8008723	NM_000502	EPX	0.649431	6.683252e-14	1.158007e-9	2.757160e-11
43	8004309	8044127	NM_024093	C2orf49	-0.648799	7.196212e-14	1.246888e-9	2.899739e-11
44	8004309	7945445	BC039077	C11orf35	0.648573	7.388600e-14	1.280223e-9	2.909597e-11
45	8004309	8086985	NM_000094	COL7A1	0.648467	7.480962e-14	1.296226e-9	2.880503e-11
46	8004309	7935528	NM_003015	SFRP5	0.648195	7.722161e-14	1.338019e-9	2.908737e-11
47	8004309	8166899	NM_022567	NYX	0.647925	7.969047e-14	1.380797e-9	2.937865e-11
48	8004309	8070933	NM_006657	FTCD	0.647590	8.285675e-14	1.435659e-9	2.990956e-11
49	8004309	8061324	NM_012255	XRN2	-0.646274	9.653418e-14	1.672648e-9	3.413567e-11
50	8004309	8086908	NM_001130082	PLXNB1	0.645763	1.024064e-13	1.774396e-9	3.548792e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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