[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2711	8115691	NM_003062	SLIT3		slit homolog 3 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 2711.
Getting list of p-values for id 2711.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8115691	7937560	NM_002457	MUC2	0.861298	4.684316e-32	8.116514e-28	8.116514e-28
2	8115691	7945688	NR_003512	INS-IGF2	0.848479	3.159176e-30	5.473904e-26	2.736952e-26
3	8115691	8049942	NM_080741	NEU4	0.845856	7.128592e-30	1.235171e-25	4.117237e-26
4	8115691	7935983	NM_005029	PITX3	0.843827	1.323784e-29	2.293721e-25	5.734302e-26
5	8115691	8002845	NM_001025200	CTRB2	0.843239	1.581486e-29	2.740242e-25	5.480483e-26
6	8115691	8131056	NM_017781	CYP2W1	0.839203	5.256108e-29	9.107259e-25	1.517876e-25
7	8115691	7913450	NM_005529	HSPG2	0.838477	6.500879e-29	1.126407e-24	1.609153e-25
8	8115691	8114550	NM_004883	NRG2	0.836037	1.317779e-28	2.283316e-24	2.854145e-25
9	8115691	7987701	NM_016642	SPTBN5	0.835399	1.582016e-28	2.741160e-24	3.045733e-25
10	8115691	7916304	NM_147193	GLIS1	0.835358	1.600531e-28	2.773240e-24	2.773240e-25
11	8115691	8014269	NM_139285	GAS2L2	0.834204	2.223359e-28	3.852414e-24	3.502195e-25
12	8115691	8121209	NM_005604	POU3F2	0.833182	2.968600e-28	5.143694e-24	4.286412e-25
13	8115691	8005328	NM_016239	MYO15A	0.831767	4.413989e-28	7.648118e-24	5.883168e-25
14	8115691	8001014	NM_173502	PRSS36	0.829198	8.989578e-28	1.557624e-23	1.112589e-24
15	8115691	7911435	NM_001014980	FAM132A	0.829159	9.087357e-28	1.574566e-23	1.049711e-24
16	8115691	7997264	NM_001906	CTRB1	0.828163	1.193293e-27	2.067619e-23	1.292262e-24
17	8115691	8125234	NM_019105	TNXB	0.827613	1.386179e-27	2.401832e-23	1.412843e-24
18	8115691	8028407	NM_000540	RYR1	0.827283	1.515868e-27	2.626545e-23	1.459192e-24
19	8115691	7937667	NM_003957	BRSK2	0.825835	2.240976e-27	3.882940e-23	2.043652e-24
20	8115691	8034643	NM_001127221	CACNA1A	0.824079	3.582776e-27	6.207876e-23	3.103938e-24
21	8115691	8153346	NM_023946	LYNX1	0.822061	6.103539e-27	1.057560e-22	5.036001e-24
22	8115691	8083887	NM_005602	CLDN11	0.821492	7.083446e-27	1.227349e-22	5.578858e-24
23	8115691	8033487	NM_032447	FBN3	0.821219	7.606463e-27	1.317972e-22	5.730312e-24
24	8115691	7955305	NM_001652	AQP6	0.821152	7.741847e-27	1.341430e-22	5.589291e-24
25	8115691	8107530	ENST00000365222		0.820428	9.348034e-27	1.619734e-22	6.478936e-24
26	8115691	7908812	NM_004767	GPR37L1	0.819963	1.054426e-26	1.827005e-22	7.026941e-24
27	8115691	8061529	NM_014012	REM1	0.819866	1.081291e-26	1.873552e-22	6.939082e-24
28	8115691	8150928	NM_003580	NSMAF	-0.819732	1.119461e-26	1.939689e-22	6.927462e-24
29	8115691	8054872	NM_014553	TFCP2L1	0.819578	1.164870e-26	2.018370e-22	6.959895e-24
30	8115691	7952893	BC024764	IQSEC3	0.819182	1.290200e-26	2.235529e-22	7.451764e-24
31	8115691	7927367	NM_001040084	ANXA8	0.818812	1.419238e-26	2.459113e-22	7.932622e-24
32	8115691	7936882	NM_001146340	NKX1-2	0.818086	1.709421e-26	2.961914e-22	9.255981e-24
33	8115691	8042537	NM_001692	ATP6V1B1	0.817922	1.782761e-26	3.088990e-22	9.360576e-24
34	8115691	7920744	NM_000298	PKLR	0.817835	1.822931e-26	3.158593e-22	9.289980e-24
35	8115691	7995310	ENST00000319817		0.817797	1.840748e-26	3.189464e-22	9.112755e-24
36	8115691	8157804	NM_182487	OLFML2A	0.816660	2.458821e-26	4.260400e-22	1.183444e-23
37	8115691	7927307	NM_001630	ANXA8L2	0.816628	2.479117e-26	4.295566e-22	1.160964e-23
38	8115691	7923360	NM_003281	TNNI1	0.816136	2.808006e-26	4.865431e-22	1.280377e-23
39	8115691	7959402	NM_030765	B3GNT4	0.815792	3.063200e-26	5.307606e-22	1.360925e-23
40	8115691	8133704	NM_001110199	SRRM3	0.815456	3.333713e-26	5.776324e-22	1.444081e-23
41	8115691	8067409	NM_005560	LAMA5	0.815377	3.400303e-26	5.891704e-22	1.437001e-23
42	8115691	8064059	NM_020882	COL20A1	0.815331	3.439939e-26	5.960383e-22	1.419139e-23
43	8115691	8125805	NM_000841	GRM4	0.814726	4.004610e-26	6.938787e-22	1.613671e-23
44	8115691	7936762	NM_001001976	ATE1	-0.814478	4.262297e-26	7.385281e-22	1.678473e-23
45	8115691	8067820	BC024764	IQSEC3	0.814333	4.419309e-26	7.657337e-22	1.701630e-23
46	8115691	8010583	NR_027255	LOC388428	0.814104	4.679420e-26	8.108031e-22	1.762615e-23
47	8115691	8033462	NM_206833	CTXN1	0.814038	4.757298e-26	8.242970e-22	1.753823e-23
48	8115691	8039362	NM_178837	C19orf51	0.813810	5.036238e-26	8.726289e-22	1.817977e-23
49	8115691	8148517	NM_001702	BAI1	0.813764	5.094270e-26	8.826842e-22	1.801396e-23
50	8115691	8004842	NM_173728	ARHGEF15	0.813510	5.427086e-26	9.403512e-22	1.880702e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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