[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6753	8039730	NM_023926	ZSCAN18		zinc finger and SCAN domain containing 18

Fetching correlation data, please wait...
Getting list of correlations for id 6753.
Getting list of p-values for id 6753.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8039730	7910265	NM_001098623	OBSCN	0.757308	8.957068e-21	1.551991e-16	1.551991e-16
2	8039730	8153876	NM_025251	ARHGAP39	0.720495	4.552909e-18	7.888825e-14	3.944413e-14
3	8039730	7897006	NM_006983	MMP23B	0.717557	7.172328e-18	1.242749e-13	4.142497e-14
4	8039730	8120022	NM_001253	CDC5L	-0.716873	7.965885e-18	1.380249e-13	3.450622e-14
5	8039730	7957715	NM_001135175	NEDD1	-0.716401	8.563720e-18	1.483836e-13	2.967671e-14
6	8039730	7911941	NM_015557	CHD5	0.716387	8.581245e-18	1.486872e-13	2.478120e-14
7	8039730	7929932	NM_030929	KAZALD1	0.715775	9.422845e-18	1.632696e-13	2.332423e-14
8	8039730	7977105	NM_152307	TRMT61A	0.713500	1.330754e-17	2.305798e-13	2.882248e-14
9	8039730	8063417	NM_017843	BCAS4	0.710745	2.012921e-17	3.487788e-13	3.875320e-14
10	8039730	8056909	NM_001880	ATF2	-0.707877	3.080442e-17	5.337482e-13	5.337482e-14
11	8039730	7970241	NM_000504	F10	0.707768	3.130460e-17	5.424148e-13	4.931044e-14
12	8039730	7983663	NM_005154	USP8	-0.706159	3.965245e-17	6.870580e-13	5.725483e-14
13	8039730	8137783	NM_001097620	TMEM184A	0.704174	5.296698e-17	9.177588e-13	7.059683e-14
14	8039730	8067820	BC024764	IQSEC3	0.703250	6.055985e-17	1.049320e-12	7.495146e-14
15	8039730	8153862	NM_001024678	LRRC24	0.702981	6.296229e-17	1.090948e-12	7.272983e-14
16	8039730	8037563	NM_006663	PPP1R13L	0.701250	8.078069e-17	1.399687e-12	8.748044e-14
17	8039730	7927367	NM_001040084	ANXA8	0.700395	9.131522e-17	1.582219e-12	9.307169e-14
18	8039730	8110382	NM_030567	PRR7	0.698320	1.226877e-16	2.125809e-12	1.181005e-13
19	8039730	8127787	NM_015525	IBTK	-0.697000	1.478690e-16	2.562126e-12	1.348487e-13
20	8039730	7952893	BC024764	IQSEC3	0.696891	1.501582e-16	2.601792e-12	1.300896e-13
21	8039730	7896985	NM_080875	MIB2	0.695790	1.752986e-16	3.037399e-12	1.446380e-13
22	8039730	7911683	NM_182533	C1orf86	0.695670	1.782871e-16	3.089180e-12	1.404173e-13
23	8039730	8151609	NM_172239	REXO1L1	0.695262	1.887591e-16	3.270629e-12	1.422013e-13
24	8039730	8112121	NM_173514	SLC38A9	-0.695055	1.943019e-16	3.366669e-12	1.402779e-13
25	8039730	8060134	NM_004321	KIF1A	0.692966	2.599500e-16	4.504154e-12	1.801662e-13
26	8039730	7941457	NM_006848	CCDC85B	0.692611	2.730655e-16	4.731406e-12	1.819771e-13
27	8039730	7941890	NM_020811	CARNS1	0.691720	3.088348e-16	5.351180e-12	1.981918e-13
28	8039730	7992758	NM_172229	KREMEN2	0.691228	3.305339e-16	5.727161e-12	2.045415e-13
29	8039730	8037651	NM_175875	SIX5	0.691093	3.367104e-16	5.834181e-12	2.011787e-13
30	8039730	8064111	NM_032957	RTEL1	0.690515	3.645793e-16	6.317066e-12	2.105689e-13
31	8039730	8039524	NM_152600	ZNF579	0.689508	4.185256e-16	7.251793e-12	2.339288e-13
32	8039730	8048551	NM_005876	SPEG	0.689504	4.187467e-16	7.255625e-12	2.267383e-13
33	8039730	8014269	NM_139285	GAS2L2	0.689348	4.278029e-16	7.412542e-12	2.246225e-13
34	8039730	7910520	NM_014236	GNPAT	-0.688901	4.547285e-16	7.879080e-12	2.317376e-13
35	8039730	8046604	NM_003659	AGPS	-0.687078	5.826256e-16	1.009515e-11	2.884330e-13
36	8039730	7931519	NM_152643	KNDC1	0.686684	6.144740e-16	1.064699e-11	2.957497e-13
37	8039730	8014969	NM_152219	GJD3	0.686231	6.532674e-16	1.131916e-11	3.059233e-13
38	8039730	8159670	NM_006647	NOXA1	0.685447	7.261217e-16	1.258151e-11	3.310924e-13
39	8039730	8051670	NM_005633	SOS1	-0.684433	8.320300e-16	1.441658e-11	3.696560e-13
40	8039730	7966189	NM_213596	FOXN4	0.683138	9.892965e-16	1.714154e-11	4.285385e-13
41	8039730	8064676	NM_145762	GFRA4	0.682961	1.012981e-15	1.755192e-11	4.280956e-13
42	8039730	7908437	NM_024529	CDC73	-0.682657	1.054824e-15	1.827693e-11	4.351651e-13
43	8039730	8112072	NM_021147	CCNO	0.681975	1.154808e-15	2.000937e-11	4.653341e-13
44	8039730	8170648	NM_001711	BGN	0.681368	1.251695e-15	2.168812e-11	4.929119e-13
45	8039730	8055406	NM_002299	LCT	0.680460	1.411268e-15	2.445303e-11	5.434008e-13
46	8039730	7934870	NM_032810	ATAD1	-0.680346	1.432647e-15	2.482348e-11	5.396408e-13
47	8039730	7932308	NM_001010908	C1QL3	0.680326	1.436318e-15	2.488709e-11	5.295125e-13
48	8039730	7996651	NM_001012984	C16orf86	0.680175	1.465333e-15	2.538983e-11	5.289548e-13
49	8039730	8023990	NM_020637	FGF22	0.679269	1.650639e-15	2.860061e-11	5.836860e-13
50	8039730	7929840	NM_003987	PAX2	0.678808	1.753582e-15	3.038432e-11	6.076865e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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