[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1568	7913593	NM_003196	TCEA3		transcription elongation factor A (SII), 3

Fetching correlation data, please wait...
Getting list of correlations for id 1568.
Getting list of p-values for id 1568.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.099 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7913593	8108050	NM_003202	TCF7	0.648176	7.739275e-14	1.340984e-9	1.340984e-9
2	7913593	7899023	NM_015627	LDLRAP1	0.625510	9.775485e-13	1.693798e-8	8.468992e-9
3	7913593	7899029	NM_020379	MAN1C1	0.617528	2.275462e-12	3.942694e-8	1.314231e-8
4	7913593	8053379	AK296608	C2orf89	0.611511	4.235341e-12	7.338576e-8	1.834644e-8
5	7913593	8018652	NM_052916	RNF157	0.606225	7.232708e-12	1.253211e-7	2.506423e-8
6	7913593	8017718	NM_004655	AXIN2	0.605203	8.011949e-12	1.388230e-7	2.313717e-8
7	7913593	8015031	NM_001838	CCR7	0.592922	2.664154e-11	4.616180e-7	6.594543e-8
8	7913593	7955045	BC008360	FAM113B	0.585374	5.439229e-11	9.424552e-7	1.178069e-7
9	7913593	8030339	NM_001459	FLT3LG	0.583456	6.501524e-11	1.126519e-6	1.251688e-7
10	7913593	8164343	NM_001035254	FAM102A	0.582189	7.310167e-11	1.266633e-6	1.266633e-7
11	7913593	8043504	NM_002371	MAL	0.581493	7.794927e-11	1.350627e-6	1.227843e-7
12	7913593	8088642	NM_015541	LRIG1	0.569981	2.205908e-10	3.822176e-6	3.185147e-7
13	7913593	7936463	NM_002313	ABLIM1	0.560951	4.852000e-10	8.407060e-6	6.466969e-7
14	7913593	7898957	NM_013441	RCAN3	0.547011	1.565570e-9	2.712663e-5	1.937617e-6
15	7913593	8148317	NM_002467	MYC	0.546704	1.605634e-9	2.782082e-5	1.854721e-6
16	7913593	8102232	NM_016269	LEF1	0.537728	3.317397e-9	5.748054e-5	3.592534e-6
17	7913593	8088458	NM_002012	FHIT	0.533424	4.662720e-9	8.079095e-5	4.752409e-6
18	7913593	7942453	NM_021200	PLEKHB1	0.532794	4.899207e-9	8.488856e-5	4.716031e-6
19	7913593	7974689	NM_016651	DACT1	0.532561	4.989659e-9	8.645582e-5	4.550307e-6
20	7913593	8008627	NM_005450	NOG	0.529694	6.239218e-9	1.081069e-4	5.405347e-6
21	7913593	8145532	NM_001979	EPHX2	0.526909	7.737461e-9	1.340670e-4	6.384142e-6
22	7913593	7986049	NM_022769	CRTC3	0.526705	7.859645e-9	1.361841e-4	6.190185e-6
23	7913593	8128247	NM_021813	BACH2	0.522736	1.064237e-8	1.844004e-4	8.017408e-6
24	7913593	7981242	NM_138576	BCL11B	0.510713	2.604085e-8	4.512098e-4	1.880041e-5
25	7913593	7925954	NM_001047160	NET1	0.510405	2.663313e-8	4.614722e-4	1.845889e-5
26	7913593	7923917	NM_005449	FAIM3	0.508590	3.038981e-8	5.265642e-4	2.025247e-5
27	7913593	7963851	NM_001098815	KIAA0748	0.508151	3.137208e-8	5.435840e-4	2.013274e-5
28	7913593	7953812	NM_004426	PHC1	0.506160	3.622070e-8	6.275961e-4	2.241415e-5
29	7913593	7930921	NM_004281	BAG3	0.503135	4.497824e-8	7.793380e-4	2.687372e-5
30	7913593	7953333	NM_001242	CD27	0.501692	4.983554e-8	8.635004e-4	2.878335e-5
31	7913593	8175023	NM_016032	ZDHHC9	0.498902	6.068656e-8	1.051516e-3	3.391987e-5
32	7913593	8063437	NM_173485	TSHZ2	0.496847	7.008466e-8	1.214357e-3	3.794865e-5
33	7913593	7963869	NM_004426	PHC1	0.496617	7.121666e-8	1.233971e-3	3.739306e-5
34	7913593	7996772	NM_003983	SLC7A6	0.494088	8.489755e-8	1.471020e-3	4.326529e-5
35	7913593	8155898	NM_006200	PCSK5	0.493974	8.557053e-8	1.482681e-3	4.236230e-5
36	7913593	7971177	NM_002015	FOXO1	0.491027	1.048281e-7	1.816357e-3	5.045435e-5
37	7913593	8169263	NM_182607	VSIG1	0.490022	1.122848e-7	1.945558e-3	5.258265e-5
38	7913593	7949412	NM_001130144	LTBP3	0.488493	1.246244e-7	2.159367e-3	5.682545e-5
39	7913593	8122986	NM_016224	SNX9	0.482702	1.840853e-7	3.189646e-3	8.178580e-5
40	7913593	8123006	NM_003898	SYNJ2	0.481710	1.966619e-7	3.407560e-3	8.518901e-5
41	7913593	7992293	NM_024600	TMEM204	0.480136	2.183251e-7	3.782919e-3	9.226633e-5
42	7913593	8121515	NM_018593	SLC16A10	0.479541	2.270881e-7	3.934755e-3	9.368465e-5
43	7913593	7904907	NM_004326	BCL9	0.478188	2.482709e-7	4.301790e-3	1.000416e-4
44	7913593	8057056	NM_133378	TTN	0.477986	2.515992e-7	4.359460e-3	9.907863e-5
45	7913593	7922029	NM_005814	GPA33	0.476911	2.699863e-7	4.678052e-3	1.039567e-4
46	7913593	8158568	NM_006676	USP20	0.476494	2.774646e-7	4.807629e-3	1.045137e-4
47	7913593	8062623	NM_002660	PLCG1	0.475243	3.010800e-7	5.216813e-3	1.109960e-4
48	7913593	8009301	NM_002737	PRKCA	0.472480	3.602204e-7	6.241539e-3	1.300321e-4
49	7913593	7994541	NM_014387	LAT	0.471261	3.896730e-7	6.751863e-3	1.377931e-4
50	7913593	8145259	NM_152272	CHMP7	0.467281	5.026207e-7	8.708909e-3	1.741782e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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