[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7551	7959234	NM_000545	HNF1A		HNF1 homeobox A

Fetching correlation data, please wait...
Getting list of correlations for id 7551.
Getting list of p-values for id 7551.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7959234	8028407	NM_000540	RYR1	0.840068	4.074426e-29	7.059758e-25	7.059758e-25
2	7959234	8114550	NM_004883	NRG2	0.823182	4.542864e-27	7.871421e-23	3.935710e-23
3	7959234	8030582	NM_001145809	MYH14	0.809262	1.541940e-25	2.671719e-21	8.905730e-22
4	7959234	7913450	NM_005529	HSPG2	0.806761	2.817067e-25	4.881132e-21	1.220283e-21
5	7959234	7995340			0.804345	5.000717e-25	8.664743e-21	1.732949e-21
6	7959234	8029458	NM_001039213	CEACAM16	0.802953	6.935535e-25	1.201720e-20	2.002867e-21
7	7959234	8131056	NM_017781	CYP2W1	0.802883	7.049446e-25	1.221457e-20	1.744939e-21
8	7959234	7946860	NM_000352	ABCC8	0.802680	7.392539e-25	1.280905e-20	1.601131e-21
9	7959234	8004842	NM_173728	ARHGEF15	0.800845	1.132331e-24	1.961990e-20	2.179989e-21
10	7959234	8137783	NM_001097620	TMEM184A	0.800332	1.274789e-24	2.208827e-20	2.208827e-21
11	7959234	8157804	NM_182487	OLFML2A	0.800321	1.278009e-24	2.214406e-20	2.013096e-21
12	7959234	8034151	NM_020812	DOCK6	0.799903	1.407277e-24	2.438389e-20	2.031991e-21
13	7959234	8135099	NM_133457	EMID2	0.795556	3.777786e-24	6.545770e-20	5.035208e-21
14	7959234	7914667	NM_052896	CSMD2	0.794198	5.118863e-24	8.869453e-20	6.335324e-21
15	7959234	7927307	NM_001630	ANXA8L2	0.790395	1.183541e-23	2.050721e-19	1.367148e-20
16	7959234	8014269	NM_139285	GAS2L2	0.789848	1.333520e-23	2.310590e-19	1.444119e-20
17	7959234	7927367	NM_001040084	ANXA8	0.789529	1.429278e-23	2.476510e-19	1.456771e-20
18	7959234	8115691	NM_003062	SLIT3	0.789144	1.553762e-23	2.692204e-19	1.495669e-20
19	7959234	7937560	NM_002457	MUC2	0.788989	1.606667e-23	2.783872e-19	1.465196e-20
20	7959234	8008228	NM_138281	DLX4	0.788985	1.608214e-23	2.786553e-19	1.393276e-20
21	7959234	8019585	NM_030966	KRTAP1-3	0.788561	1.762568e-23	3.054002e-19	1.454287e-20
22	7959234	8015189	NM_030966	KRTAP1-3	0.788561	1.762568e-23	3.054002e-19	1.388183e-20
23	7959234	7997801	NM_013278	IL17C	0.787372	2.276528e-23	3.944541e-19	1.715018e-20
24	7959234	7953150	NM_003213	TEAD4	0.786573	2.701846e-23	4.681488e-19	1.950620e-20
25	7959234	8096556	NM_015143	METAP1	-0.784753	3.978479e-23	6.893510e-19	2.757404e-20
26	7959234	8032312	NM_138813	ATP8B3	0.783612	5.061945e-23	8.770832e-19	3.373397e-20
27	7959234	7898616	NM_022819	PLA2G2F	0.782561	6.310655e-23	1.093447e-18	4.049804e-20
28	7959234	8157818	NM_001045476	WDR38	0.781656	7.621959e-23	1.320657e-18	4.716632e-20
29	7959234	8060126	NM_198998	AQP12A	0.781559	7.776538e-23	1.347441e-18	4.646347e-20
30	7959234	7991893	BC016613	C16orf11	0.780314	1.006912e-22	1.744676e-18	5.815586e-20
31	7959234	8155083	NM_001216	CA9	0.778954	1.332555e-22	2.308917e-18	7.448120e-20
32	7959234	8032051	NM_182577	ODF3L2	0.778689	1.406789e-22	2.437544e-18	7.617325e-20
33	7959234	8150197	NM_024025	DUSP26	0.777855	1.668496e-22	2.891003e-18	8.760616e-20
34	7959234	8150928	NM_003580	NSMAF	-0.777679	1.729533e-22	2.996762e-18	8.814005e-20
35	7959234	8010287	NM_030968	C1QTNF1	0.777393	1.833390e-22	3.176715e-18	9.076330e-20
36	7959234	8086985	NM_000094	COL7A1	0.777016	1.979529e-22	3.429930e-18	9.527582e-20
37	7959234	8087907	NM_020163	SEMA3G	0.773999	3.637644e-22	6.302945e-18	1.703499e-19
38	7959234	8005328	NM_016239	MYO15A	0.773940	3.680472e-22	6.377154e-18	1.678198e-19
39	7959234	8153101	NM_152888	COL22A1	0.773461	4.049810e-22	7.017107e-18	1.799258e-19
40	7959234	8049729	NM_198998	AQP12A	0.773403	4.097167e-22	7.099160e-18	1.774790e-19
41	7959234	8053872	NM_001002036	ASTL	0.773165	4.296126e-22	7.443898e-18	1.815585e-19
42	7959234	7990683	NM_015162	ACSBG1	0.772952	4.482165e-22	7.766246e-18	1.849106e-19
43	7959234	8062796	NM_024034	GDAP1L1	0.772600	4.807122e-22	8.329300e-18	1.937047e-19
44	7959234	7936144	NM_000494	COL17A1	0.772597	4.810138e-22	8.334526e-18	1.894211e-19
45	7959234	8125805	NM_000841	GRM4	0.772142	5.264479e-22	9.121763e-18	2.027058e-19
46	7959234	8053728	NM_000798	DRD5	0.771485	5.996395e-22	1.038995e-17	2.258686e-19
47	7959234	7945688	NR_003512	INS-IGF2	0.771447	6.041632e-22	1.046834e-17	2.227305e-19
48	7959234	8027556	NM_002333	LRP3	0.771262	6.266122e-22	1.085731e-17	2.261939e-19
49	7959234	8072316	NM_001017437	CCDC157	0.771138	6.420589e-22	1.112495e-17	2.270399e-19
50	7959234	7997533	NM_013370	OSGIN1	0.770035	7.975875e-22	1.381980e-17	2.763960e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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