[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5480	7999102	NM_003223	TFAP4		transcription factor AP-4 (activating enhancer binding protein 4)

Fetching correlation data, please wait...
Getting list of correlations for id 5480.
Getting list of p-values for id 5480.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999102	8030403	NM_020719	PRR12	0.619941	1.767133e-12	3.061912e-8	3.061912e-8
2	7999102	8017393	NM_030576	LIMD2	0.565540	3.260017e-10	5.648631e-6	2.824315e-6
3	7999102	7966343	ENST00000365465		-0.557628	6.446546e-10	1.116993e-5	3.723310e-6
4	7999102	7909931	NM_144695	C1orf58	-0.555533	7.699288e-10	1.334056e-5	3.335139e-6
5	7999102	7964250	NM_006601	PTGES3	-0.551559	1.074679e-9	1.862096e-5	3.724192e-6
6	7999102	8151118	NM_025054	VCPIP1	-0.550455	1.178012e-9	2.041141e-5	3.401901e-6
7	7999102	8131957	NM_013322	SNX10	-0.548909	1.339021e-9	2.320121e-5	3.314459e-6
8	7999102	8155422	NM_201453	CBWD3	-0.548688	1.363665e-9	2.362823e-5	2.953529e-6
9	7999102	7967493	NM_006312	NCOR2	0.548365	1.400503e-9	2.426652e-5	2.696280e-6
10	7999102	8055702	NM_004688	NMI	-0.548069	1.435107e-9	2.486609e-5	2.486609e-6
11	7999102	8040549			0.547506	1.503226e-9	2.604640e-5	2.367855e-6
12	7999102	8089527	NM_022488	ATG3	-0.547172	1.545053e-9	2.677114e-5	2.230928e-6
13	7999102	8148824	NM_005526	HSF1	0.546763	1.597816e-9	2.768535e-5	2.129642e-6
14	7999102	8097116	ENST00000364316		-0.545216	1.813502e-9	3.142255e-5	2.244468e-6
15	7999102	8154178	NM_004972	JAK2	-0.542937	2.182899e-9	3.782310e-5	2.521540e-6
16	7999102	7967658			-0.542859	2.196737e-9	3.806285e-5	2.378928e-6
17	7999102	8045933	NM_004180	TANK	-0.542639	2.236217e-9	3.874693e-5	2.279231e-6
18	7999102	8091141	NM_019001	XRN1	-0.541910	2.371951e-9	4.109879e-5	2.283266e-6
19	7999102	7995382	NM_001031835	PHKB	-0.540277	2.705431e-9	4.687700e-5	2.467211e-6
20	7999102	8100382	NM_012110	CHIC2	-0.540268	2.707296e-9	4.690931e-5	2.345466e-6
21	7999102	8055913	NM_017892	PRPF40A	-0.540094	2.745495e-9	4.757118e-5	2.265294e-6
22	7999102	7917528	ENST00000439531		-0.539932	2.781236e-9	4.819047e-5	2.190476e-6
23	7999102	8113305	NM_001270	CHD1	-0.538943	3.010586e-9	5.216443e-5	2.268019e-6
24	7999102	7918902	NR_026665	CD58	-0.537885	3.276175e-9	5.676629e-5	2.365262e-6
25	7999102	7926836	NM_021252	RAB18	-0.536696	3.600959e-9	6.239382e-5	2.495753e-6
26	7999102	7957177	NM_014999	RAB21	-0.536627	3.620757e-9	6.273686e-5	2.412956e-6
27	7999102	8146637	NM_152758	YTHDF3	-0.536459	3.669518e-9	6.358174e-5	2.354879e-6
28	7999102	8179184	NM_013993	DDR1	0.536210	3.742495e-9	6.484622e-5	2.315936e-6
29	7999102	8082940	NM_015396	ARMC8	-0.535981	3.811229e-9	6.603716e-5	2.277143e-6
30	7999102	7903541	NM_007269	STXBP3	-0.535494	3.960868e-9	6.862997e-5	2.287666e-6
31	7999102	7918825	NM_001007553	CSDE1	-0.535362	4.002591e-9	6.935289e-5	2.237190e-6
32	7999102	8167006	NM_006915	RP2	-0.534868	4.161664e-9	7.210915e-5	2.253411e-6
33	7999102	8016562	NM_001007230	SPOP	-0.533752	4.544255e-9	7.873831e-5	2.386009e-6
34	7999102	8124273	NM_030939	C6orf62	-0.533386	4.676970e-9	8.103786e-5	2.383467e-6
35	7999102	8135464	NM_000108	DLD	-0.532702	4.934514e-9	8.550033e-5	2.442867e-6
36	7999102	7960088	NM_001142641	FBRSL1	0.532536	4.999297e-9	8.662283e-5	2.406190e-6
37	7999102	8011293	NM_015229	KIAA0664	0.532069	5.185213e-9	8.984419e-5	2.428221e-6
38	7999102	8045247	NM_017958	PLEKHB2	-0.532067	5.186372e-9	8.986427e-5	2.364849e-6
39	7999102	8161587	NM_201453	CBWD3	-0.532052	5.192335e-9	8.996758e-5	2.306861e-6
40	7999102	8131975	NM_006024	TAX1BP1	-0.531286	5.512473e-9	9.551463e-5	2.387866e-6
41	7999102	8155636	NM_201453	CBWD3	-0.530261	5.970333e-9	1.034480e-4	2.523121e-6
42	7999102	7910640	NM_004837	GGPS1	-0.529634	6.268624e-9	1.086164e-4	2.586106e-6
43	7999102	8161537	NM_201453	CBWD3	-0.529436	6.365423e-9	1.102937e-4	2.564970e-6
44	7999102	8079346	NM_014016	SACM1L	-0.529189	6.488676e-9	1.124293e-4	2.555211e-6
45	7999102	8045514	NM_001001664	SPOPL	-0.529164	6.501247e-9	1.126471e-4	2.503269e-6
46	7999102	8150757	NM_014781	RB1CC1	-0.528895	6.637720e-9	1.150118e-4	2.500256e-6
47	7999102	7902771	NM_016009	SH3GLB1	-0.528704	6.736951e-9	1.167311e-4	2.483641e-6
48	7999102	8047339	NR_026584	BZW1L1	-0.528509	6.839299e-9	1.185045e-4	2.468844e-6
49	7999102	7951397	NM_033292	CASP1	-0.528371	6.912437e-9	1.197718e-4	2.444322e-6
50	7999102	8161575	ENST00000377395		-0.527833	7.205831e-9	1.248554e-4	2.497109e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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