Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13864	8155636	NM_201453	CBWD3		COBW domain containing 3

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8155636	8161587	NM_201453	CBWD3		0.994969	9.556153e-105	1.655795e-100	1.655795e-100
2	8155636	8161537	NM_201453	CBWD3		0.991699	1.394972e-93	2.417067e-89	1.208534e-89
3	8155636	8159815	NM_001145355	CBWD1		0.988940	3.398652e-87	5.888844e-83	1.962948e-83
4	8155636	8044613	NM_001145355	CBWD1		0.988072	1.631805e-85	2.827429e-81	7.068573e-82
5	8155636	8155422	NM_201453	CBWD3		0.982510	5.158526e-77	8.938179e-73	1.787636e-73
6	8155636	8161575	ENST00000377395			0.915492	1.602139e-42	2.776026e-38	4.626709e-39
7	8155636	7926836	NM_021252	RAB18		0.913442	5.220027e-42	9.044740e-38	1.292106e-38
8	8155636	8045919	NM_022826	MARCH7		0.910710	2.411013e-41	4.177562e-37	5.221953e-38
9	8155636	7933947	NM_022079	HERC4		0.909778	4.017405e-41	6.960957e-37	7.734397e-38
10	8155636	8042601	NM_014497	ZNF638		0.908887	6.512016e-41	1.128337e-36	1.128337e-37
11	8155636	7958216	NM_015275	KIAA1033		0.907473	1.387587e-40	2.404271e-36	2.185701e-37
12	8155636	7970907	NM_014887	N4BP2L2		0.902684	1.647936e-39	2.855380e-35	2.379483e-36
13	8155636	8138401	NM_015132	SNX13		0.895505	5.342111e-38	9.256276e-34	7.120213e-35
14	8155636	8069711	NM_015565	RNF160		0.895327	5.803392e-38	1.005554e-33	7.182527e-35
15	8155636	8058127	NR_027856	CLK1		0.895299	5.879118e-38	1.018675e-33	6.791165e-35
16	8155636	8169750	NM_001042750	STAG2		0.894094	1.026991e-37	1.779467e-33	1.112167e-34
17	8155636	8048146	NM_021141	XRCC5		0.892082	2.568646e-37	4.450693e-33	2.618055e-34
18	8155636	8059393	NM_003590	CUL3		0.890739	4.689608e-37	8.125683e-33	4.514268e-34
19	8155636	8052307	NM_001122964	SMEK2		0.889610	7.730882e-37	1.339530e-32	7.050158e-34
20	8155636	8105681	NM_018695	ERBB2IP		0.889450	8.293706e-37	1.437051e-32	7.185253e-34
21	8155636	8022767	NM_014939	KIAA1012		0.889294	8.881878e-37	1.538963e-32	7.328396e-34
22	8155636	8042270	NM_001001521	UGP2		0.889088	9.724424e-37	1.684951e-32	7.658868e-34
23	8155636	8146637	NM_152758	YTHDF3		0.887892	1.637054e-36	2.836523e-32	1.233271e-33
24	8155636	8115022	NM_001025105	CSNK1A1		0.887693	1.784602e-36	3.092180e-32	1.288409e-33
25	8155636	7976598	NM_032632	PAPOLA		0.887411	2.015859e-36	3.492878e-32	1.397151e-33
26	8155636	7938592	NM_032228	FAR1		0.885961	3.750150e-36	6.497884e-32	2.499186e-33
27	8155636	7935320	NM_020123	TM9SF3		0.885660	4.261764e-36	7.384359e-32	2.734948e-33
28	8155636	8055672	NM_015702	MMADHC		0.885320	4.921502e-36	8.527487e-32	3.045531e-33
29	8155636	8124273	NM_030939	C6orf62		0.884130	8.120181e-36	1.406984e-31	4.851668e-33
30	8155636	7902166	NM_020948	MIER1		0.883658	9.885803e-36	1.712913e-31	5.709710e-33
31	8155636	8091141	NM_019001	XRN1		0.883458	1.074622e-35	1.861998e-31	6.006444e-33
32	8155636	7932678	NM_139312	YME1L1		0.883070	1.262044e-35	2.186744e-31	6.833576e-33
33	8155636	8135464	NM_000108	DLD		0.881746	2.176969e-35	3.772035e-31	1.143041e-32
34	8155636	8136259	NM_013255	MKLN1		0.881743	2.179562e-35	3.776527e-31	1.110743e-32
35	8155636	7968516	NM_015032	PDS5B		0.881027	2.918480e-35	5.056850e-31	1.444814e-32
36	8155636	8016898	NM_001078166	SRSF1		0.879230	6.026878e-35	1.044277e-30	2.900770e-32
37	8155636	8083183	NM_001080415	SR140		0.878702	7.439208e-35	1.288992e-30	3.483761e-32
38	8155636	7932616	NM_005470	ABI1		0.878256	8.881650e-35	1.538923e-30	4.049798e-32
39	8155636	8152222	NM_015878	AZIN1		0.878249	8.909084e-35	1.543677e-30	3.958146e-32
40	8155636	7964937	NM_144982	ZFC3H1		0.878202	9.073770e-35	1.572212e-30	3.930530e-32
41	8155636	8013908	NM_020772	NUFIP2		0.877725	1.096133e-34	1.899270e-30	4.632366e-32
42	8155636	8147396	NM_017864	INTS8		0.877466	1.214107e-34	2.103683e-30	5.008769e-32
43	8155636	7974621	NM_002892	ARID4A		0.877065	1.421490e-34	2.463015e-30	5.727942e-32
44	8155636	8068460	NM_015358	MORC3		0.877053	1.428010e-34	2.474312e-30	5.623437e-32
45	8155636	8084016	NM_006218	PIK3CA		0.875608	2.508766e-34	4.346939e-30	9.659865e-32
46	8155636	7903032	NM_007358	MTF2		0.875115	3.036366e-34	5.261111e-30	1.143720e-31
47	8155636	8120992	NM_015021	ZNF292		0.874751	3.493924e-34	6.053922e-30	1.288068e-31
48	8155636	8005765	NM_015626	WSB1		0.873791	5.047734e-34	8.746208e-30	1.822127e-31
49	8155636	8045697	NM_018151	RIF1		0.873563	5.506832e-34	9.541688e-30	1.947283e-31
50	8155636	8067903	NM_013396	USP25		0.872996	6.829043e-34	1.183268e-29	2.366536e-31

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.