Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13652	8159815	NM_001145355	CBWD1		COBW domain containing 1
13870	8044613	NM_001145355	CBWD1		COBW domain containing 1

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8159815	8044613	NM_001145355	CBWD1		0.993435	8.188207e-99	2.837541e-94	2.837541e-94
2	8044613	8159815	NM_001145355	CBWD1		0.993435	8.188207e-99	2.837541e-94	1.418771e-94
3	8159815	8161587	NM_201453	CBWD3		0.989961	2.384062e-89	8.261728e-85	2.753909e-85
4	8159815	8155636	NM_201453	CBWD3		0.988940	3.398652e-87	1.177769e-82	2.944422e-83
5	8044613	8155636	NM_201453	CBWD3		0.988072	1.631805e-85	5.654858e-81	1.130972e-81
6	8044613	8161587	NM_201453	CBWD3		0.986976	1.465651e-83	5.079068e-79	8.465113e-80
7	8159815	8161537	NM_201453	CBWD3		0.986122	3.782233e-82	1.310695e-77	1.872422e-78
8	8044613	8161537	NM_201453	CBWD3		0.983799	1.033127e-78	3.580197e-74	4.475246e-75
9	8159815	8155422	NM_201453	CBWD3		0.980281	2.351689e-74	8.149544e-70	9.055049e-71
10	8044613	8155422	NM_201453	CBWD3		0.978321	2.947106e-72	1.021290e-67	1.021290e-68
11	8044613	8161575	ENST00000377395			0.905027	4.990705e-40	1.729479e-35	1.572253e-36
12	8159815	8042601	NM_014497	ZNF638		0.903888	8.955918e-40	3.103584e-35	2.586320e-36
13	8159815	8045919	NM_022826	MARCH7		0.902020	2.299045e-39	7.967111e-35	6.128547e-36
14	8044613	7926836	NM_021252	RAB18		0.900607	4.631513e-39	1.605005e-34	1.146432e-35
15	8159815	7926836	NM_021252	RAB18		0.900452	4.999726e-39	1.732605e-34	1.155070e-35
16	8159815	7933947	NM_022079	HERC4		0.899156	9.408707e-39	3.260493e-34	2.037808e-35
17	8044613	8042601	NM_014497	ZNF638		0.899045	9.929830e-39	3.441083e-34	2.024167e-35
18	8044613	7958216	NM_015275	KIAA1033		0.896800	2.906120e-38	1.007087e-33	5.594928e-35
19	8044613	8045919	NM_022826	MARCH7		0.896787	2.924007e-38	1.013286e-33	5.333082e-35
20	8159815	8161575	ENST00000377395			0.895709	4.854855e-38	1.682401e-33	8.412007e-35
21	8044613	7933947	NM_022079	HERC4		0.894494	8.540481e-38	2.959618e-33	1.409342e-34
22	8159815	7958216	NM_015275	KIAA1033		0.893620	1.277153e-37	4.425846e-33	2.011748e-34
23	8159815	7970907	NM_014887	N4BP2L2		0.893212	1.538353e-37	5.331010e-33	2.317830e-34
24	8159815	8058127	NR_027856	CLK1		0.889898	6.808176e-37	2.359305e-32	9.830438e-34
25	8044613	7970907	NM_014887	N4BP2L2		0.889649	7.600942e-37	2.634030e-32	1.053612e-33
26	8159815	7968333	NM_005800	USPL1		0.888274	1.386877e-36	4.806084e-32	1.848494e-33
27	8159815	8091141	NM_019001	XRN1		0.887410	2.016360e-36	6.987493e-32	2.587960e-33
28	8044613	8058127	NR_027856	CLK1		0.887065	2.339092e-36	8.105888e-32	2.894960e-33
29	8159815	8138401	NM_015132	SNX13		0.886961	2.446265e-36	8.477285e-32	2.923202e-33
30	8159815	7903032	NM_007358	MTF2		0.886420	3.083470e-36	1.068546e-31	3.561819e-33
31	8159815	8022767	NM_014939	KIAA1012		0.886377	3.141013e-36	1.088487e-31	3.511247e-33
32	8159815	8052307	NM_001122964	SMEK2		0.885222	5.130621e-36	1.777966e-31	5.556142e-33
33	8159815	8016898	NM_001078166	SRSF1		0.884592	6.690129e-36	2.318397e-31	7.025446e-33
34	8159815	8115022	NM_001025105	CSNK1A1		0.884501	6.950668e-36	2.408684e-31	7.084366e-33
35	8044613	8042270	NM_001001521	UGP2		0.884361	7.371418e-36	2.554491e-31	7.298546e-33
36	8044613	8055672	NM_015702	MMADHC		0.884358	7.379682e-36	2.557355e-31	7.103764e-33
37	8159815	8147396	NM_017864	INTS8		0.884270	7.657031e-36	2.653467e-31	7.171534e-33
38	8044613	8138401	NM_015132	SNX13		0.884268	7.665132e-36	2.656275e-31	6.990197e-33
39	8159815	8067903	NM_013396	USP25		0.884244	7.739631e-36	2.682092e-31	6.877159e-33
40	8044613	8022767	NM_014939	KIAA1012		0.882453	1.628536e-35	5.643529e-31	1.410882e-32
41	8159815	8048146	NM_021141	XRCC5		0.882083	1.895914e-35	6.570102e-31	1.602464e-32
42	8159815	7964937	NM_144982	ZFC3H1		0.881972	1.984413e-35	6.876784e-31	1.637330e-32
43	8044613	7903032	NM_007358	MTF2		0.881593	2.317564e-35	8.031287e-31	1.867741e-32
44	8159815	8105681	NM_018695	ERBB2IP		0.881568	2.341034e-35	8.112620e-31	1.843777e-32
45	8159815	8083183	NM_001080415	SR140		0.881210	2.709081e-35	9.388050e-31	2.086233e-32
46	8044613	8115022	NM_001025105	CSNK1A1		0.881105	2.827807e-35	9.799484e-31	2.130323e-32
47	8044613	8052307	NM_001122964	SMEK2		0.880701	3.331973e-35	1.154662e-30	2.456727e-32
48	8159815	8069711	NM_015565	RNF160		0.880219	4.048946e-35	1.403122e-30	2.923170e-32
49	8159815	8059393	NM_003590	CUL3		0.880210	4.064486e-35	1.408507e-30	2.874504e-32
50	8159815	7935320	NM_020123	TM9SF3		0.880054	4.327500e-35	1.499652e-30	2.999304e-32

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.