[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7398	7923360	NM_003281	TNNI1		troponin I type 1 (skeletal, slow)

Fetching correlation data, please wait...
Getting list of correlations for id 7398.
Getting list of p-values for id 7398.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.160 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7923360	7937560	NM_002457	MUC2	0.853971	5.462783e-31	9.465365e-27	9.465365e-27
2	7923360	8008228	NM_138281	DLX4	0.842674	1.874940e-29	3.248708e-25	1.624354e-25
3	7923360	8114550	NM_004883	NRG2	0.835437	1.565069e-28	2.711796e-24	9.039319e-25
4	7923360	8004842	NM_173728	ARHGEF15	0.828586	1.063250e-27	1.842293e-23	4.605733e-24
5	7923360	8083887	NM_005602	CLDN11	0.828409	1.115902e-27	1.933523e-23	3.867046e-24
6	7923360	8064242	NR_027686	NCRNA00176	0.820404	9.404904e-27	1.629588e-22	2.715979e-23
7	7923360	7984892	NM_021819	LMAN1L	0.820230	9.839897e-27	1.704959e-22	2.435656e-23
8	7923360	8115691	NM_003062	SLIT3	0.816136	2.808006e-26	4.865431e-22	6.081789e-23
9	7923360	8110382	NM_030567	PRR7	0.814646	4.086309e-26	7.080348e-22	7.867053e-23
10	7923360	8125383	NM_004557	NOTCH4	0.813541	5.384884e-26	9.330388e-22	9.330388e-23
11	7923360	8039362	NM_178837	C19orf51	0.812697	6.640901e-26	1.150669e-21	1.046063e-22
12	7923360	8121209	NM_005604	POU3F2	0.808696	1.768504e-25	3.064287e-21	2.553573e-22
13	7923360	8131056	NM_017781	CYP2W1	0.808524	1.843685e-25	3.194553e-21	2.457348e-22
14	7923360	8036270	NM_152658	THAP8	0.807853	2.167832e-25	3.756203e-21	2.683002e-22
15	7923360	7955305	NM_001652	AQP6	0.807327	2.459691e-25	4.261907e-21	2.841271e-22
16	7923360	8024605	NM_021938	CELF5	0.807129	2.579302e-25	4.469157e-21	2.793223e-22
17	7923360	8157818	NM_001045476	WDR38	0.806809	2.784762e-25	4.825158e-21	2.838328e-22
18	7923360	7952227	NM_015645	C1QTNF5	0.806330	3.122680e-25	5.410667e-21	3.005926e-22
19	7923360	7935983	NM_005029	PITX3	0.806126	3.278296e-25	5.680303e-21	2.989633e-22
20	7923360	8019576	NM_033184	KRTAP2-4	0.805943	3.424615e-25	5.933831e-21	2.966916e-22
21	7923360	8015210	NM_033184	KRTAP2-4	0.805943	3.424615e-25	5.933831e-21	2.825634e-22
22	7923360	7953150	NM_003213	TEAD4	0.804411	4.923520e-25	8.530983e-21	3.877720e-22
23	7923360	8159670	NM_006647	NOXA1	0.803144	6.631815e-25	1.149095e-20	4.996064e-22
24	7923360	8067409	NM_005560	LAMA5	0.803004	6.853619e-25	1.187527e-20	4.948027e-22
25	7923360	8060126	NM_198998	AQP12A	0.801569	9.575168e-25	1.659089e-20	6.636357e-22
26	7923360	8037732	NM_001029861	NANOS2	0.800232	1.304521e-24	2.260343e-20	8.693628e-22
27	7923360	8021199	NM_002747	MAPK4	0.800178	1.320955e-24	2.288819e-20	8.477107e-22
28	7923360	8002830	NM_153486	LDHD	0.799319	1.609054e-24	2.788009e-20	9.957174e-22
29	7923360	8001014	NM_173502	PRSS36	0.799115	1.686065e-24	2.921445e-20	1.007395e-21
30	7923360	7953450	NM_014262	LEPREL2	0.798535	1.925327e-24	3.336014e-20	1.112005e-21
31	7923360	7911435	NM_001014980	FAM132A	0.798325	2.019428e-24	3.499063e-20	1.128730e-21
32	7923360	8033462	NM_206833	CTXN1	0.798134	2.109360e-24	3.654889e-20	1.142153e-21
33	7923360	7937200	NM_015722	CALY	0.797988	2.180757e-24	3.778598e-20	1.145030e-21
34	7923360	8038280	NM_000737	CGB	0.797368	2.510421e-24	4.349807e-20	1.279355e-21
35	7923360	8033487	NM_032447	FBN3	0.796865	2.813047e-24	4.874166e-20	1.392619e-21
36	7923360	8153101	NM_152888	COL22A1	0.796701	2.919063e-24	5.057860e-20	1.404961e-21
37	7923360	8010783	NM_018949	UTS2R	0.796573	3.004678e-24	5.206205e-20	1.407083e-21
38	7923360	7989887	NM_032445	MEGF11	0.795779	3.593380e-24	6.226250e-20	1.638487e-21
39	7923360	7971150	NM_005780	LHFP	0.795485	3.838934e-24	6.651721e-20	1.705570e-21
40	7923360	7992758	NM_172229	KREMEN2	0.795450	3.868683e-24	6.703267e-20	1.675817e-21
41	7923360	8028407	NM_000540	RYR1	0.795286	4.013399e-24	6.954016e-20	1.696101e-21
42	7923360	8030181	NM_033378	CGB2	0.794874	4.401156e-24	7.625883e-20	1.815686e-21
43	7923360	7977978	NM_005864	EFS	0.794780	4.495244e-24	7.788909e-20	1.811374e-21
44	7923360	8153346	NM_023946	LYNX1	0.794710	4.566105e-24	7.911690e-20	1.798111e-21
45	7923360	8044927	NM_002193	INHBB	0.794699	4.577026e-24	7.930613e-20	1.762358e-21
46	7923360	8155942	NM_001013735	FOXB2	0.794466	4.821998e-24	8.355077e-20	1.816321e-21
47	7923360	8038299	NM_033142	CGB7	0.794042	5.298985e-24	9.181551e-20	1.953521e-21
48	7923360	8018379	NM_020753	CASKIN2	0.793322	6.218904e-24	1.077550e-19	2.244895e-21
49	7923360	8086391	NM_000729	CCK	0.793101	6.531014e-24	1.131629e-19	2.309446e-21
50	7923360	7936144	NM_000494	COL17A1	0.793057	6.594621e-24	1.142650e-19	2.285300e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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