[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
514	8093906	NM_006005	WFS1		Wolfram syndrome 1 (wolframin)

Fetching correlation data, please wait...
Getting list of correlations for id 514.
Getting list of p-values for id 514.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8093906	7987701	NM_016642	SPTBN5	0.777464	1.807008e-22	3.131003e-18	3.131003e-18
2	8093906	7992302	NM_020825	CRAMP1L	0.761902	3.807379e-21	6.597045e-17	3.298523e-17
3	8093906	8172580	NM_005183	CACNA1F	0.756460	1.046826e-20	1.813835e-16	6.046117e-17
4	8093906	8060134	NM_004321	KIF1A	0.748969	4.037261e-20	6.995363e-16	1.748841e-16
5	8093906	8016168	NM_133373	PLCD3	0.744329	9.097400e-20	1.576307e-15	3.152613e-16
6	8093906	8125072	NM_025258	C6orf27	0.737295	3.016607e-19	5.226875e-15	8.711458e-16
7	8093906	7952011	NM_004588	SCN2B	0.736797	3.278919e-19	5.681383e-15	8.116261e-16
8	8093906	7947991	NM_015231	NUP160	-0.735282	4.221843e-19	7.315188e-15	9.143985e-16
9	8093906	8128620	NM_001080450	BEND3	0.731339	8.082250e-19	1.400412e-14	1.556013e-15
10	8093906	8025321	NR_002931	CLEC4GP1	0.728676	1.245138e-18	2.157450e-14	2.157450e-15
11	8093906	7934544	NM_144589	COMTD1	0.728107	1.364689e-18	2.364596e-14	2.149633e-15
12	8093906	8159670	NM_006647	NOXA1	0.726584	1.742332e-18	3.018939e-14	2.515782e-15
13	8093906	8179716	NM_001264	CDSN	0.724613	2.384677e-18	4.131929e-14	3.178407e-15
14	8093906	7937560	NM_002457	MUC2	0.722949	3.101275e-18	5.373579e-14	3.838271e-15
15	8093906	8153704	NM_031309	SCRT1	0.722679	3.235670e-18	5.606446e-14	3.737631e-15
16	8093906	8137783	NM_001097620	TMEM184A	0.721607	3.827504e-18	6.631917e-14	4.144948e-15
17	8093906	8149612	NM_021020	LZTS1	0.718269	6.427905e-18	1.113763e-13	6.551548e-15
18	8093906	8098895	NM_001013622	FAM53A	0.716041	9.047876e-18	1.567725e-13	8.709586e-15
19	8093906	7977216	NM_015656	KIF26A	0.715884	9.266199e-18	1.605554e-13	8.450286e-15
20	8093906	8112121	NM_173514	SLC38A9	-0.714305	1.178191e-17	2.041451e-13	1.020725e-14
21	8093906	8070933	NM_006657	FTCD	0.712844	1.469272e-17	2.545808e-13	1.212289e-14
22	8093906	7991893	BC016613	C16orf11	0.712284	1.598415e-17	2.769574e-13	1.258897e-14
23	8093906	8155572	NR_024060	FAM27A	0.711716	1.740545e-17	3.015842e-13	1.311236e-14
24	8093906	8059028	NM_194302	CCDC108	0.711297	1.853301e-17	3.211214e-13	1.338006e-14
25	8093906	7983663	NM_005154	USP8	-0.711217	1.875576e-17	3.249811e-13	1.299924e-14
26	8093906	8161026	NM_174923	CCDC107	0.711088	1.912097e-17	3.313091e-13	1.274266e-14
27	8093906	8060660	NM_052970	HSPA12B	0.711000	1.937646e-17	3.357359e-13	1.243466e-14
28	8093906	8024100	NM_138690	GRIN3B	0.710942	1.954420e-17	3.386423e-13	1.209437e-14
29	8093906	8145865	NM_032777	GPR124	0.710723	2.019444e-17	3.499091e-13	1.206583e-14
30	8093906	7919582	XR_039086	LOC100133075	0.710311	2.147488e-17	3.720953e-13	1.240318e-14
31	8093906	7935983	NM_005029	PITX3	0.709952	2.265339e-17	3.925152e-13	1.266178e-14
32	8093906	7998843	NM_031948	PRSS27	0.709180	2.540642e-17	4.402170e-13	1.375678e-14
33	8093906	8076962	NM_002969	MAPK12	0.708971	2.620570e-17	4.540661e-13	1.375958e-14
34	8093906	8007584	NM_080863	ASB16	0.708395	2.853865e-17	4.944891e-13	1.454380e-14
35	8093906	7953450	NM_014262	LEPREL2	0.708350	2.872882e-17	4.977842e-13	1.422241e-14
36	8093906	7928645	NM_001099338	FAM22A	0.708108	2.977449e-17	5.159026e-13	1.433063e-14
37	8093906	8151615			0.707860	3.088320e-17	5.351131e-13	1.446252e-14
38	8093906	7945550	NM_018494	LRDD	0.707563	3.226367e-17	5.590327e-13	1.471139e-14
39	8093906	8151607	NR_003594	REXO1L2P	0.707346	3.331318e-17	5.772174e-13	1.480045e-14
40	8093906	8151623	NR_003594	REXO1L2P	0.707346	3.331318e-17	5.772174e-13	1.443044e-14
41	8093906	8151603	NR_003594	REXO1L2P	0.707346	3.331318e-17	5.772174e-13	1.407847e-14
42	8093906	8064014	NM_022082	SLC17A9	0.706902	3.555845e-17	6.161213e-13	1.466956e-14
43	8093906	8151619	NR_003594	REXO1L2P	0.706900	3.557321e-17	6.163770e-13	1.433435e-14
44	8093906	7897416	NM_001080397	SLC45A1	0.706822	3.598134e-17	6.234488e-13	1.416929e-14
45	8093906	8120698	NM_133645	MTO1	-0.706790	3.614746e-17	6.263271e-13	1.391838e-14
46	8093906	7931417	NM_001105521	JAKMIP3	0.706527	3.757214e-17	6.510125e-13	1.415245e-14
47	8093906	8067610	NM_000744	CHRNA4	0.706132	3.981146e-17	6.898131e-13	1.467688e-14
48	8093906	8153876	NM_025251	ARHGAP39	0.705970	4.076556e-17	7.063449e-13	1.471552e-14
49	8093906	8140403	NM_080744	SRCRB4D	0.705809	4.173848e-17	7.232027e-13	1.475924e-14
50	8093906	7974771	NM_022495	C14orf135	-0.704343	5.168353e-17	8.955205e-13	1.791041e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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