[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
654	7988426	NM_013309	SLC30A4		solute carrier family 30 (zinc transporter), member 4

Fetching correlation data, please wait...
Getting list of correlations for id 654.
Getting list of p-values for id 654.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.105 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7988426	8048340	NM_005444	RQCD1	0.510419	2.660570e-8	4.609970e-4	4.609970e-4
2	7988426	8010918	NM_001128159	VPS53	0.493046	9.124035e-8	1.580922e-3	7.904608e-4
3	7988426	7903393	NM_001400	S1PR1	0.488851	1.216204e-7	2.107317e-3	7.024389e-4
4	7988426	8089830	NM_001099678	LRRC58	0.471811	3.761112e-7	6.516879e-3	1.629220e-3
5	7988426	8007799	NR_026680	MGC57346	0.471004	3.961633e-7	6.864321e-3	1.372864e-3
6	7988426	7912385	NM_001001998	EXOSC10	0.459513	8.185018e-7	1.418218e-2	2.363697e-3
7	7988426	8127987	NR_002743	SNORD50A	0.454180	1.136160e-6	1.968625e-2	2.812321e-3
8	7988426	8117653			0.453612	1.176167e-6	2.037944e-2	2.547430e-3
9	7988426	8095221	NM_001079525	PAICS	0.452690	1.243949e-6	2.155390e-2	2.394878e-3
10	7988426	8145782	NM_032509	MAK16	0.448368	1.613976e-6	2.796535e-2	2.796535e-3
11	7988426	7970577	NM_005932	MIPEP	0.446759	1.776783e-6	3.078632e-2	2.798757e-3
12	7988426	8155699	NM_000144	FXN	0.445467	1.918567e-6	3.324302e-2	2.770251e-3
13	7988426	8137874	NM_032415	CARD11	0.443155	2.199312e-6	3.810748e-2	2.931345e-3
14	7988426	7979611	NM_006977	ZBTB25	0.440352	2.592068e-6	4.491276e-2	3.208054e-3
15	7988426	8116929	NM_002948	RPL15	0.437158	3.120076e-6	5.406156e-2	3.604104e-3
16	7988426	7996012	NM_012106	ARL2BP	0.436520	3.237056e-6	5.608847e-2	3.505530e-3
17	7988426	8092534	NM_080652	TMEM41A	0.435614	3.410510e-6	5.909390e-2	3.476112e-3
18	7988426	7941136	NM_013265	C11orf2	0.434452	3.645442e-6	6.316457e-2	3.509143e-3
19	7988426	7919560	ENST00000384476		0.433988	3.743650e-6	6.486622e-2	3.414012e-3
20	7988426	7932862	ENST00000410143		-0.432082	4.173397e-6	7.231245e-2	3.615622e-3
21	7988426	8043725	NM_001079	ZAP70	0.430923	4.457036e-6	7.722706e-2	3.677479e-3
22	7988426	8011850	NM_001212	C1QBP	0.429965	4.705076e-6	8.152484e-2	3.705675e-3
23	7988426	7985119	NM_018200	HMG20A	0.427561	5.386172e-6	9.332621e-2	4.057661e-3
24	7988426	8085431	NM_024923	NUP210	0.426961	5.570053e-6	9.651231e-2	4.021346e-3
25	7988426	8115410	NM_015465	GEMIN5	0.426704	5.650633e-6	9.790852e-2	3.916341e-3
26	7988426	8167656	NM_001005333	MAGED1	0.426449	5.731799e-6	9.931489e-2	3.819803e-3
27	7988426	7933945	ENST00000411165		-0.425668	5.986857e-6	1.037343e-1	3.842010e-3
28	7988426	7966052	NM_004075	CRY1	0.423986	6.573185e-6	1.138936e-1	4.067628e-3
29	7988426	8060503	NR_002738	SNORD57	0.422522	7.127131e-6	1.234918e-1	4.258338e-3
30	7988426	8139392	NM_019082	DDX56	0.422330	7.202955e-6	1.248056e-1	4.160187e-3
31	7988426	8163807	NM_015651	PHF19	0.420955	7.768576e-6	1.346061e-1	4.342133e-3
32	7988426	7919556	ENST00000384476		0.420876	7.802063e-6	1.351863e-1	4.224573e-3
33	7988426	8133167	NM_153033	KCTD7	0.420758	7.852740e-6	1.360644e-1	4.123165e-3
34	7988426	8133192	NM_017994	C7orf42	0.420213	8.090900e-6	1.401910e-1	4.123265e-3
35	7988426	8067094	NM_199427	ZFP64	0.419347	8.483017e-6	1.469852e-1	4.199578e-3
36	7988426	8109528	NM_001037332	CYFIP2	0.419182	8.559838e-6	1.483163e-1	4.119898e-3
37	7988426	8044669	NM_013412	RABL2A	0.419031	8.630248e-6	1.495363e-1	4.041522e-3
38	7988426	7995342			-0.416738	9.775496e-6	1.693800e-1	4.457369e-3
39	7988426	7926096	NM_031923	TAF3	0.416458	9.924363e-6	1.719594e-1	4.409216e-3
40	7988426	8025395	NM_001031	RPS28	0.416225	1.005052e-5	1.741453e-1	4.353633e-3
41	7988426	8030368	NM_001015	RPS11	0.414377	1.110259e-5	1.923745e-1	4.692062e-3
42	7988426	7942824	NM_001031	RPS28	0.414019	1.131818e-5	1.961101e-1	4.669288e-3
43	7988426	8079563	NM_138615	DHX30	0.414013	1.132159e-5	1.961692e-1	4.562074e-3
44	7988426	8022110	NM_001143823	ZFP161	0.413972	1.134691e-5	1.966078e-1	4.468360e-3
45	7988426	8042107	ENST00000434851		0.412016	1.259767e-5	2.182798e-1	4.850662e-3
46	7988426	7951112	NR_023356	MTMR2	0.411859	1.270372e-5	2.201173e-1	4.785159e-3
47	7988426	8065612	NM_080616	C20orf112	0.411492	1.295487e-5	2.244691e-1	4.775938e-3
48	7988426	7925611	NM_022366	TFB2M	0.410891	1.337543e-5	2.317561e-1	4.828252e-3
49	7988426	7956930	NM_006482	DYRK2	0.410416	1.371688e-5	2.376724e-1	4.850457e-3
50	7988426	7974363	NM_000953	PTGDR	0.409908	1.409093e-5	2.441536e-1	4.883072e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation