[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3308.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3308	7919560	ENST00000384476

Fetching correlation data, please wait...
Getting list of correlations for id 3308.
Getting list of p-values for id 3308.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.081 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919560	7919556	ENST00000384476		0.986933	1.735450e-83	3.007014e-79	3.007014e-79
2	7919560	8161024	NR_003051	RMRP	0.627562	7.836745e-13	1.357873e-8	6.789364e-9
3	7919560	8056215	AK093576		0.584515	5.892192e-11	1.020940e-6	3.403133e-7
4	7919560	7929593	NR_026712	RPL13AP5	0.562942	4.086120e-10	7.080021e-6	1.770005e-6
5	7919560	7971858	ENST00000334406		0.562475	4.254590e-10	7.371929e-6	1.474386e-6
6	7919560	8161017	NM_014450	SIT1	0.558074	6.206496e-10	1.075400e-5	1.792333e-6
7	7919560	7942824	NM_001031	RPS28	0.544203	1.969616e-9	3.412753e-5	4.875362e-6
8	7919560	8025395	NM_001031	RPS28	0.544015	1.999915e-9	3.465252e-5	4.331565e-6
9	7919560	8005471	NM_001031	RPS28	0.537373	3.412495e-9	5.912830e-5	6.569811e-6
10	7919560	7954063	NR_003932	RPL13AP20	0.521283	1.187973e-8	2.058401e-4	2.058401e-5
11	7919560	8065762	NM_080476	PIGU	0.519985	1.310066e-8	2.269951e-4	2.063592e-5
12	7919560	8157139	ENST00000306634		0.517030	1.634361e-8	2.831858e-4	2.359882e-5
13	7919560	8056763	ENST00000433675		0.511441	2.469134e-8	4.278268e-4	3.290975e-5
14	7919560	8117422	NM_003540	HIST1H4F	0.510268	2.690092e-8	4.661123e-4	3.329373e-5
15	7919560	8117598	NM_021968	HIST1H4J	0.506896	3.434994e-8	5.951814e-4	3.967876e-5
16	7919560	8177824	NM_014046	MRPS18B	0.502428	4.730024e-8	8.195712e-4	5.122320e-5
17	7919560	8117955	NM_014046	MRPS18B	0.502428	4.730024e-8	8.195712e-4	4.821007e-5
18	7919560	8179139	NM_014046	MRPS18B	0.502428	4.730024e-8	8.195712e-4	4.553173e-5
19	7919560	7903393	NM_001400	S1PR1	0.500681	5.353441e-8	9.275907e-4	4.882056e-5
20	7919560	8075778	NM_012473	TXN2	0.500644	5.367400e-8	9.300094e-4	4.650047e-5
21	7919560	8052022	AY779046	RPL18A	0.500393	5.463447e-8	9.466514e-4	4.507864e-5
22	7919560	8030368	NM_001015	RPS11	0.494121	8.470374e-8	1.467662e-3	6.671190e-5
23	7919560	8129095	ENST00000435100		0.492598	9.409981e-8	1.630467e-3	7.088989e-5
24	7919560	8125752	NM_015921	CUTA	0.491505	1.014467e-7	1.757767e-3	7.324030e-5
25	7919560	8043276	NR_004378	SNORD94	0.490813	1.063759e-7	1.843175e-3	7.372701e-5
26	7919560	8030360	NR_000021	SNORD32A	0.490457	1.089950e-7	1.888557e-3	7.263679e-5
27	7919560	8172307	NM_007130	ZNF41	0.488097	1.280186e-7	2.218179e-3	8.215476e-5
28	7919560	7922414	NR_003942	SNORD76	0.487645	1.320088e-7	2.287316e-3	8.168985e-5
29	7919560	7960131	ENST00000425052		0.487302	1.351148e-7	2.341134e-3	8.072877e-5
30	7919560	7919576	NR_004421	RNU1-4	0.482655	1.846563e-7	3.199540e-3	1.066513e-4
31	7919560	7912800	NR_004421	RNU1-4	0.482655	1.846563e-7	3.199540e-3	1.032110e-4
32	7919560	7898411	NR_004421	RNU1-4	0.482655	1.846563e-7	3.199540e-3	9.998561e-5
33	7919560	7912850	NR_004421	RNU1-4	0.482655	1.846563e-7	3.199540e-3	9.695575e-5
34	7919560	7898375	NR_004421	RNU1-4	0.482655	1.846563e-7	3.199540e-3	9.410411e-5
35	7919560	8124531	NM_003533	HIST1H3I	0.482356	1.883765e-7	3.263999e-3	9.325713e-5
36	7919560	8066776	NM_033550	TP53RK	0.478693	2.401526e-7	4.161124e-3	1.155868e-4
37	7919560	8124521	NM_003541	HIST1H4K	0.478198	2.481080e-7	4.298967e-3	1.161883e-4
38	7919560	7954310	NR_003286	RN18S1	0.476823	2.715462e-7	4.705081e-3	1.238179e-4
39	7919560	7984562	NM_001003	RPLP1	0.476180	2.832131e-7	4.907234e-3	1.258265e-4
40	7919560	7987572			0.475217	3.015883e-7	5.225621e-3	1.306405e-4
41	7919560	8060503	NR_002738	SNORD57	0.472532	3.589966e-7	6.220334e-3	1.517155e-4
42	7919560	8026440	NM_000984	RPL23A	0.472287	3.647324e-7	6.319718e-3	1.504695e-4
43	7919560	7981986	NR_003332	SNORD116-17	0.472264	3.652706e-7	6.329044e-3	1.471871e-4
44	7919560	7981982	NR_003332	SNORD116-17	0.472264	3.652706e-7	6.329044e-3	1.438419e-4
45	7919560	8056966	ENST00000405359		0.472175	3.673721e-7	6.365456e-3	1.414546e-4
46	7919560	7937476	NM_001004	RPLP2	0.471794	3.765094e-7	6.523778e-3	1.418213e-4
47	7919560	7941136	NM_013265	C11orf2	0.471350	3.874387e-7	6.713151e-3	1.428330e-4
48	7919560	7973896	NR_004421	RNU1-4	0.469508	4.360774e-7	7.555914e-3	1.574149e-4
49	7919560	7978568	NR_004421	RNU1-4	0.469508	4.360774e-7	7.555914e-3	1.542023e-4
50	7919560	7981988	NR_003334	SNORD116-20	0.469465	4.372777e-7	7.576710e-3	1.515342e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation