[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16618.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16618	7912800	NR_004421	RNU1-4		RNA, U1 small nuclear 4

Fetching correlation data, please wait...
Getting list of correlations for id 16618.
Getting list of p-values for id 16618.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.071 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7912800	7898411	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7912800	7898375	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7912800	7912850	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7912800	7919576	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7912800	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.479841e-62	2.959682e-63
6	7912800	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.479841e-62	2.466401e-63
7	7912800	7919269	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	2.560887e-47
8	7912800	7919349	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	2.240776e-47
9	7912800	8102787	ENST00000384592		0.860166	6.907956e-32	1.196941e-27	1.329935e-28
10	7912800	8004506	NR_002918	SNORA48	0.758275	7.493280e-21	1.298361e-16	1.298361e-17
11	7912800	8116952	ENST00000383975		0.727196	1.579918e-18	2.737525e-14	2.488659e-15
12	7912800	8030360	NR_000021	SNORD32A	0.717779	6.931528e-18	1.201026e-13	1.000855e-14
13	7912800	8135943	ENST00000364171		0.713720	1.287212e-17	2.230353e-13	1.715656e-14
14	7912800	8030362	NR_000020	SNORD33	0.704667	4.930371e-17	8.542854e-13	6.102038e-14
15	7912800	7948894	NR_002716	RNU2-1	0.695672	1.782316e-16	3.088220e-12	2.058813e-13
16	7912800	7953383	NR_004387	SCARNA10	0.692731	2.685350e-16	4.652906e-12	2.908066e-13
17	7912800	8161024	NR_003051	RMRP	0.681476	1.233798e-15	2.137801e-11	1.257530e-12
18	7912800	8049299	NR_003006	SCARNA6	0.679931	1.513048e-15	2.621658e-11	1.456477e-12
19	7912800	8006319	ENST00000410779		0.677027	2.213008e-15	3.834479e-11	2.018147e-12
20	7912800	8053447	ENST00000410372		0.675023	2.869745e-15	4.972408e-11	2.486204e-12
21	7912800	7960728	NR_003010	SCARNA12	0.671979	4.241690e-15	7.349576e-11	3.499798e-12
22	7912800	7920873	NR_002974	SNORA42	0.667400	7.570841e-15	1.311800e-10	5.962726e-12
23	7912800	7977507	NR_002312	RPPH1	0.666362	8.620042e-15	1.493595e-10	6.493890e-12
24	7912800	8107857	ENST00000362585		0.666012	9.004931e-15	1.560284e-10	6.501185e-12
25	7912800	8169634	ENST00000384446		0.661941	1.490382e-14	2.582384e-10	1.032954e-11
26	7912800	8133070	ENST00000384614		0.661835	1.510025e-14	2.616420e-10	1.006316e-11
27	7912800	8050350	ENST00000365378		0.661095	1.653274e-14	2.864629e-10	1.060974e-11
28	7912800	7957604	ENST00000410468		0.657822	2.461855e-14	4.265655e-10	1.523448e-11
29	7912800	7898570			0.655857	3.119461e-14	5.405091e-10	1.863824e-11
30	7912800	8106250	ENST00000410895		0.654224	3.792531e-14	6.571318e-10	2.190439e-11
31	7912800	7897801	NR_002754	RNU5E	0.652480	4.666216e-14	8.085152e-10	2.608114e-11
32	7912800	7967030	NR_003925	RNU4-1	0.646690	9.198377e-14	1.593803e-9	4.980634e-11
33	7912800	7984620	ENST00000364003		0.636676	2.876586e-13	4.984261e-9	1.510382e-10
34	7912800	8044961	NR_023343	RNU4ATAC	0.632127	4.763302e-13	8.253373e-9	2.427463e-10
35	7912800	8066260	NR_003017	SNORA71C	0.630673	5.587158e-13	9.680868e-9	2.765962e-10
36	7912800	7996260	ENST00000364041		0.629157	6.591250e-13	1.142066e-8	3.172405e-10
37	7912800	7966299	ENST00000411405		0.627558	7.839758e-13	1.358395e-8	3.671337e-10
38	7912800	8134431	ENST00000410174		0.625712	9.565804e-13	1.657467e-8	4.361755e-10
39	7912800	8098326	ENST00000410173		0.623972	1.152607e-12	1.997121e-8	5.120824e-10
40	7912800	8095214	ENST00000363871		0.623123	1.261822e-12	2.186358e-8	5.465896e-10
41	7912800	8133106	NR_002961	SNORA22	0.622328	1.373100e-12	2.379170e-8	5.802853e-10
42	7912800	7905127	ENST00000410896		0.621397	1.515451e-12	2.625823e-8	6.251959e-10
43	7912800	8020139	ENST00000411206		0.620484	1.668766e-12	2.891471e-8	6.724351e-10
44	7912800	8170479	NM_001017980	VMA21	0.619651	1.821889e-12	3.156788e-8	7.174517e-10
45	7912800	7981383	ENST00000411111		0.619240	1.902300e-12	3.296114e-8	7.324699e-10
46	7912800	8112176	NR_023344	RNU6ATAC	0.617160	2.364619e-12	4.097176e-8	8.906904e-10
47	7912800	7970842			0.616631	2.498598e-12	4.329320e-8	9.211320e-10
48	7912800	7899480	NR_002907	SNORA73A	0.615147	2.914451e-12	5.049869e-8	1.052056e-9
49	7912800	8041281			0.613958	3.295095e-12	5.709411e-8	1.165186e-9
50	7912800	8107996	ENST00000364404		0.612273	3.917890e-12	6.788528e-8	1.357706e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation