[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16717.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16717	7919349	NR_004421	RNU1-4		RNA, U1 small nuclear 4

Fetching correlation data, please wait...
Getting list of correlations for id 16717.
Getting list of p-values for id 16717.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919349	7919269	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7919349	7978568	NR_004421	RNU1-4	0.948852	2.213915e-53	3.836050e-49	1.918025e-49
3	7919349	7973896	NR_004421	RNU1-4	0.948852	2.213915e-53	3.836050e-49	1.278683e-49
4	7919349	7919576	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	4.481552e-47
5	7919349	7898375	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	3.585242e-47
6	7919349	7898411	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	2.987702e-47
7	7919349	7912800	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	2.560887e-47
8	7919349	7912850	NR_004421	RNU1-4	0.942177	1.034582e-50	1.792621e-46	2.240776e-47
9	7919349	8102787	ENST00000384592		0.899113	9.604455e-39	1.664164e-34	1.849071e-35
10	7919349	8116952	ENST00000383975		0.725199	2.172704e-18	3.764643e-14	3.764643e-15
11	7919349	8004506	NR_002918	SNORA48	0.720650	4.444361e-18	7.700744e-14	7.000676e-15
12	7919349	8135943	ENST00000364171		0.713965	1.240487e-17	2.149392e-13	1.791160e-14
13	7919349	7953383	NR_004387	SCARNA10	0.672007	4.226843e-15	7.323851e-11	5.633732e-12
14	7919349	8030360	NR_000021	SNORD32A	0.671974	4.244378e-15	7.354233e-11	5.253024e-12
15	7919349	8030362	NR_000020	SNORD33	0.662817	1.338118e-14	2.318557e-10	1.545705e-11
16	7919349	7996260	ENST00000364041		0.647891	8.000195e-14	1.386194e-9	8.663711e-11
17	7919349	7948894	NR_002716	RNU2-1	0.647052	8.819977e-14	1.528237e-9	8.989631e-11
18	7919349	7898570			0.646665	9.225967e-14	1.598583e-9	8.881018e-11
19	7919349	8050350	ENST00000365378		0.646661	9.229647e-14	1.599221e-9	8.416953e-11
20	7919349	8107857	ENST00000362585		0.642738	1.449948e-13	2.512325e-9	1.256163e-10
21	7919349	7957604	ENST00000410468		0.641132	1.741019e-13	3.016664e-9	1.436507e-10
22	7919349	7977507	NR_002312	RPPH1	0.626477	8.809917e-13	1.526494e-8	6.938610e-10
23	7919349	8020139	ENST00000411206		0.625523	9.762247e-13	1.691504e-8	7.354367e-10
24	7919349	8053447	ENST00000410372		0.623553	1.205245e-12	2.088328e-8	8.701368e-10
25	7919349	8049299	NR_003006	SCARNA6	0.623156	1.257387e-12	2.178674e-8	8.714697e-10
26	7919349	8006319	ENST00000410779		0.619796	1.794271e-12	3.108933e-8	1.195743e-9
27	7919349	8071593	ENST00000364115		0.619582	1.835164e-12	3.179788e-8	1.177699e-9
28	7919349	8130622	ENST00000364115		0.619582	1.835164e-12	3.179788e-8	1.135639e-9
29	7919349	7960728	NR_003010	SCARNA12	0.619517	1.847673e-12	3.201464e-8	1.103953e-9
30	7919349	8098326	ENST00000410173		0.615765	2.733615e-12	4.736535e-8	1.578845e-9
31	7919349	8106250	ENST00000410895		0.609689	5.098833e-12	8.834747e-8	2.849918e-9
32	7919349	8031867			0.609580	5.155646e-12	8.933187e-8	2.791621e-9
33	7919349	8133070	ENST00000384614		0.609140	5.390986e-12	9.340961e-8	2.830594e-9
34	7919349	8169634	ENST00000384446		0.606843	6.797558e-12	1.177813e-7	3.464155e-9
35	7919349	8095214	ENST00000363871		0.606174	7.269387e-12	1.259567e-7	3.598762e-9
36	7919349	7984620	ENST00000364003		0.605784	7.559124e-12	1.309769e-7	3.638249e-9
37	7919349	7897801	NR_002754	RNU5E	0.605460	7.808665e-12	1.353007e-7	3.656777e-9
38	7919349	7920873	NR_002974	SNORA42	0.604855	8.295449e-12	1.437352e-7	3.782507e-9
39	7919349	7967030	NR_003925	RNU4-1	0.603776	9.236491e-12	1.600407e-7	4.103607e-9
40	7919349	7905127	ENST00000410896		0.602723	1.025420e-11	1.776745e-7	4.441861e-9
41	7919349	8041281			0.601387	1.170141e-11	2.027502e-7	4.945128e-9
42	7919349	8161024	NR_003051	RMRP	0.601249	1.186205e-11	2.055337e-7	4.893659e-9
43	7919349	8077526			0.600911	1.226402e-11	2.124986e-7	4.941828e-9
44	7919349	7899480	NR_002907	SNORA73A	0.597880	1.650237e-11	2.859366e-7	6.498560e-9
45	7919349	8133106	NR_002961	SNORA22	0.595529	2.073218e-11	3.592266e-7	7.982813e-9
46	7919349	8148057			0.592353	2.813274e-11	4.874559e-7	1.059687e-8
47	7919349	7981383	ENST00000411111		0.589109	3.829647e-11	6.635629e-7	1.411836e-8
48	7919349	7943890	ENST00000416328		-0.587741	4.356786e-11	7.549004e-7	1.572709e-8
49	7919349	8066262	NR_003018	SNORA71D	0.587278	4.550831e-11	7.885226e-7	1.609230e-8
50	7919349	8134431	ENST00000410174		0.586894	4.717695e-11	8.174349e-7	1.634870e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation