[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 9 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16616	7898375	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16617	7898411	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16618	7912800	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16619	7912850	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16620	7919576	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16621	7973896	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16622	7978568	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16716	7919269	NR_004421	RNU1-4		RNA, U1 small nuclear 4
16717	7919349	NR_004421	RNU1-4		RNA, U1 small nuclear 4

Fetching correlation data, please wait...
Getting list of correlations for id 16616.
Getting list of p-values for id 16616.
1 of 9 done.
Getting list of correlations for id 16617.
Getting list of p-values for id 16617.
2 of 9 done.
Getting list of correlations for id 16618.
Getting list of p-values for id 16618.
3 of 9 done.
Getting list of correlations for id 16619.
Getting list of p-values for id 16619.
4 of 9 done.
Getting list of correlations for id 16620.
Getting list of p-values for id 16620.
5 of 9 done.
Getting list of correlations for id 16621.
Getting list of p-values for id 16621.
6 of 9 done.
Getting list of correlations for id 16622.
Getting list of p-values for id 16622.
7 of 9 done.
Getting list of correlations for id 16716.
Getting list of p-values for id 16716.
8 of 9 done.
Getting list of correlations for id 16717.
Getting list of p-values for id 16717.
9 of 9 done.
Calculating corrections for multiple testing (n=155943), please wait...
Done; whole program took 0.592 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919576	7912850	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7919576	7898375	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7912800	7912850	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	7898411	7912800	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	7912800	7898411	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	7912850	7919576	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	7919576	7912800	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
8	7912850	7912800	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
9	7919576	7898411	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
10	7912850	7898411	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
11	7912800	7919576	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
12	7898411	7919576	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
13	7912850	7898375	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
14	7912800	7898375	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
15	7919349	7919269	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
16	7978568	7973896	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
17	7973896	7978568	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
18	7919269	7919349	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
19	7898411	7898375	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
20	7898411	7912850	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
21	7898375	7919576	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
22	7898375	7898411	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
23	7898375	7912800	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
24	7898375	7912850	NR_004421	RNU1-4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
25	7978568	7898375	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	5.327427e-63
26	7912850	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	5.122526e-63
27	7919576	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.932803e-63
28	7919576	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.756631e-63
29	7912800	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.592610e-63
30	7978568	7912800	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.439523e-63
31	7898411	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.296312e-63
32	7973896	7898375	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.162052e-63
33	7978568	7912850	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	4.035930e-63
34	7898411	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.917226e-63
35	7978568	7919576	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.805305e-63
36	7898375	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.699602e-63
37	7973896	7919576	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.599613e-63
38	7973896	7912850	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.504886e-63
39	7973896	7912800	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.415017e-63
40	7898375	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.329642e-63
41	7912850	7978568	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.248431e-63
42	7973896	7898411	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.171088e-63
43	7978568	7898411	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.097341e-63
44	7912800	7973896	NR_004421	RNU1-4	0.972242	8.540664e-67	1.331857e-61	3.026947e-63
45	7973896	7919349	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	7.672101e-50
46	7978568	7919269	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	7.505316e-50
47	7978568	7919349	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	7.345628e-50
48	7919269	7973896	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	7.192594e-50
49	7973896	7919269	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	7.045807e-50
50	7919269	7978568	NR_004421	RNU1-4	0.948852	2.213915e-53	3.452445e-48	6.904891e-50

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation