[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1825	7932326	NM_001081	CUBN		cubilin (intrinsic factor-cobalamin receptor)

Fetching correlation data, please wait...
Getting list of correlations for id 1825.
Getting list of p-values for id 1825.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7932326	8078173	NM_138381	OXNAD1	0.604482	8.609137e-12	1.491705e-7	1.491705e-7
2	7932326	8047659	NM_005759	ABI2	0.604331	8.740109e-12	1.514399e-7	7.571994e-8
3	7932326	7996772	NM_003983	SLC7A6	0.596237	1.935844e-11	3.354237e-7	1.118079e-7
4	7932326	7932390	NM_004412	TRDMT1	0.593656	2.483053e-11	4.302386e-7	1.075596e-7
5	7932326	8041995	NM_003128	SPTBN1	0.592533	2.765130e-11	4.791141e-7	9.582282e-8
6	7932326	7936463	NM_002313	ABLIM1	0.588186	4.178117e-11	7.239423e-7	1.206571e-7
7	7932326	7972487	NM_015296	DOCK9	0.586900	4.715188e-11	8.170006e-7	1.167144e-7
8	7932326	8075430	NM_014941	MORC2	0.585108	5.575774e-11	9.661143e-7	1.207643e-7
9	7932326	7955450	NM_015416	LETMD1	0.579634	9.245891e-11	1.602036e-6	1.780040e-7
10	7932326	7898939	NM_020448	NIPAL3	0.577639	1.109210e-10	1.921929e-6	1.921929e-7
11	7932326	8112865	NM_178276	SERINC5	0.576048	1.281402e-10	2.220285e-6	2.018441e-7
12	7932326	7924636	NM_014698	TMEM63A	0.574084	1.529516e-10	2.650192e-6	2.208493e-7
13	7932326	8057056	NM_133378	TTN	0.571917	1.856962e-10	3.217558e-6	2.475045e-7
14	7932326	7910752	NM_000254	MTR	0.567414	2.766498e-10	4.793511e-6	3.423937e-7
15	7932326	7901804	NM_176877	INADL	0.565117	3.382724e-10	5.861245e-6	3.907497e-7
16	7932326	8173217	NM_015185	ARHGEF9	0.561096	4.791987e-10	8.303076e-6	5.189423e-7
17	7932326	8047677	NM_006139	CD28	0.557456	6.541873e-10	1.133510e-5	6.667708e-7
18	7932326	7951140	AY358248	LOC100131541	0.554928	8.102281e-10	1.403882e-5	7.799346e-7
19	7932326	8128138	NM_014611	MDN1	0.552059	1.030744e-9	1.785971e-5	9.399846e-7
20	7932326	7963851	NM_001098815	KIAA0748	0.551855	1.048418e-9	1.816594e-5	9.082968e-7
21	7932326	8141490	NR_003613	PMS2L1	0.548672	1.365517e-9	2.366031e-5	1.126682e-6
22	7932326	8088468	AF134979	NPCDR1	0.546724	1.602882e-9	2.777314e-5	1.262415e-6
23	7932326	7909545	NM_145759	TRAF5	0.545780	1.731837e-9	3.000754e-5	1.304676e-6
24	7932326	8009255	NM_138363	CCDC45	0.545734	1.738321e-9	3.011989e-5	1.254996e-6
25	7932326	8142100	NM_020725	ATXN7L1	0.541517	2.448431e-9	4.242396e-5	1.696959e-6
26	7932326	8174692	NM_145799	SEPT6	0.540586	2.638998e-9	4.572592e-5	1.758689e-6
27	7932326	8085716	NM_002971	SATB1	0.540377	2.683637e-9	4.649938e-5	1.722199e-6
28	7932326	8009301	NM_002737	PRKCA	0.540279	2.704898e-9	4.686777e-5	1.673849e-6
29	7932326	8169419	BC117377	ALG13	0.537722	3.318821e-9	5.750521e-5	1.982938e-6
30	7932326	8146159	NM_001134296	AP3M2	0.537270	3.440599e-9	5.961527e-5	1.987176e-6
31	7932326	8169263	NM_182607	VSIG1	0.536035	3.795014e-9	6.575622e-5	2.121168e-6
32	7932326	7930226	NM_014976	PDCD11	0.535562	3.939717e-9	6.826347e-5	2.133233e-6
33	7932326	8046380	NM_000210	ITGA6	0.535445	3.976390e-9	6.889892e-5	2.087846e-6
34	7932326	7909455	NM_025228	TRAF3IP3	0.532333	5.079514e-9	8.801275e-5	2.588610e-6
35	7932326	7932433	NM_182543	NSUN6	0.532142	5.155875e-9	8.933584e-5	2.552453e-6
36	7932326	8139592	NM_004507	HUS1	0.532101	5.172580e-9	8.962530e-5	2.489592e-6
37	7932326	8023766	NM_173630	RTTN	0.528493	6.847418e-9	1.186452e-4	3.206627e-6
38	7932326	8133531	NR_027775	PMS2L5	0.528173	7.019210e-9	1.216219e-4	3.200575e-6
39	7932326	8160332	NM_004529	MLLT3	0.527961	7.135093e-9	1.236298e-4	3.169994e-6
40	7932326	7905339	NM_144618	GABPB2	0.527589	7.342461e-9	1.272228e-4	3.180571e-6
41	7932326	8066303	NM_032221	CHD6	0.526708	7.857995e-9	1.361555e-4	3.320865e-6
42	7932326	8101701	NM_152542	PPM1K	0.525922	8.346418e-9	1.446184e-4	3.443295e-6
43	7932326	8112881	ENST00000459419		0.525399	8.687351e-9	1.505257e-4	3.500598e-6
44	7932326	7991216	NM_017996	DET1	0.525342	8.725454e-9	1.511859e-4	3.436044e-6
45	7932326	7957890	NM_014503	UTP20	0.524286	9.458718e-9	1.638912e-4	3.642027e-6
46	7932326	7941702	NM_006328	RBM14	0.524180	9.535733e-9	1.652257e-4	3.591862e-6
47	7932326	8114861	NM_020117	LARS	0.522213	1.107313e-8	1.918641e-4	4.082216e-6
48	7932326	7945873	NR_002822	MGC72080	0.521986	1.126474e-8	1.951841e-4	4.066335e-6
49	7932326	8145259	NM_152272	CHMP7	0.520969	1.216435e-8	2.107717e-4	4.301464e-6
50	7932326	8077376	NM_001099952	ITPR1	0.519746	1.333839e-8	2.311142e-4	4.622284e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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