[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4873	8069553	NM_003489	NRIP1		nuclear receptor interacting protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 4873.
Getting list of p-values for id 4873.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8069553	7943580	NM_003478	CUL5	0.816149	2.798898e-26	4.849651e-22	4.849651e-22
2	8069553	8129706	NM_006620	HBS1L	0.804204	5.170427e-25	8.958799e-21	4.479400e-21
3	8069553	7943297	NM_014679	CEP57	0.803772	5.722772e-25	9.915847e-21	3.305282e-21
4	8069553	7902634	NM_025065	RPF1	0.797823	2.263936e-24	3.922721e-20	9.806803e-21
5	8069553	7947221	NM_018362	LIN7C	0.796022	3.402434e-24	5.895398e-20	1.179080e-20
6	8069553	7986769	NM_130839	UBE3A	0.794947	4.329851e-24	7.502333e-20	1.250389e-20
7	8069553	7936567	NM_014904	RAB11FIP2	0.790424	1.176153e-23	2.037920e-19	2.911315e-20
8	8069553	7927786	NM_001001330	REEP3	0.786835	2.554598e-23	4.426352e-19	5.532939e-20
9	8069553	8078270	NM_002948	RPL15	0.785734	3.231142e-23	5.598600e-19	6.220666e-20
10	8069553	7987361	NM_014106	ZNF770	0.785658	3.283221e-23	5.688837e-19	5.688837e-20
11	8069553	8084146	NM_001013439	FXR1	0.784840	3.906178e-23	6.768234e-19	6.152940e-20
12	8069553	8146717	NM_013257	SGK3	0.783638	5.033935e-23	8.722299e-19	7.268582e-20
13	8069553	7901867	NM_003368	USP1	0.780360	9.973399e-23	1.728091e-18	1.329301e-19
14	8069553	8023735	NM_019022	TMX3	0.779947	1.086133e-22	1.881943e-18	1.344245e-19
15	8069553	8020903	NM_020474	GALNT1	0.779115	1.289015e-22	2.233477e-18	1.488985e-19
16	8069553	8001185	NM_005880	DNAJA2	0.778262	1.535380e-22	2.660354e-18	1.662721e-19
17	8069553	7976080	NM_003608	GPR65	0.777993	1.622127e-22	2.810660e-18	1.653329e-19
18	8069553	8089584	NM_015412	C3orf17	0.777038	1.970566e-22	3.414400e-18	1.896889e-19
19	8069553	7970681	NM_005977	RNF6	0.777006	1.983703e-22	3.437162e-18	1.809032e-19
20	8069553	7988605	NM_004236	COPS2	0.776466	2.213067e-22	3.834582e-18	1.917291e-19
21	8069553	7971820	NM_016075	VPS36	0.776406	2.240333e-22	3.881825e-18	1.848488e-19
22	8069553	8056426	NM_024753	TTC21B	0.773876	3.727863e-22	6.459268e-18	2.936031e-19
23	8069553	7968835	NM_016248	AKAP11	0.772185	5.220708e-22	9.045921e-18	3.933009e-19
24	8069553	8134122	NM_005751	AKAP9	0.771212	6.327682e-22	1.096397e-17	4.568323e-19
25	8069553	7913712	NM_006625	SRSF10	0.769333	9.151536e-22	1.585687e-17	6.342747e-19
26	8069553	8097066	NM_020961	METTL14	0.769113	9.553180e-22	1.655279e-17	6.366460e-19
27	8069553	8135688	NM_016200	NAA38	0.768939	9.882326e-22	1.712311e-17	6.341891e-19
28	8069553	8039068	NM_021074	NDUFV2	0.768740	1.027320e-21	1.780037e-17	6.357274e-19
29	8069553	8092564	NM_004593	TRA2B	0.767833	1.225450e-21	2.123338e-17	7.321855e-19
30	8069553	8144894	NM_018142	INTS10	0.767536	1.298225e-21	2.249434e-17	7.498113e-19
31	8069553	8055913	NM_017892	PRPF40A	0.766871	1.476178e-21	2.557774e-17	8.250882e-19
32	8069553	7929562	NM_014803	ZNF518A	0.766854	1.481118e-21	2.566333e-17	8.019790e-19
33	8069553	8063283	NM_001316	CSE1L	0.766445	1.602642e-21	2.776898e-17	8.414844e-19
34	8069553	8082911	NM_006153	NCK1	0.766422	1.609776e-21	2.789259e-17	8.203703e-19
35	8069553	7927267	NM_019054	FAM35A	0.766379	1.622996e-21	2.812165e-17	8.034756e-19
36	8069553	8128472	NM_006828	ASCC3	0.766163	1.692100e-21	2.931902e-17	8.144172e-19
37	8069553	8020423	NM_020774	MIB1	0.766121	1.705691e-21	2.955451e-17	7.987704e-19
38	8069553	7908421	NM_004600	TROVE2	0.765276	2.005915e-21	3.475648e-17	9.146443e-19
39	8069553	7924351	NM_004446	EPRS	0.765266	2.009705e-21	3.482216e-17	8.928758e-19
40	8069553	7971967	NM_014953	DIS3	0.765152	2.054203e-21	3.559317e-17	8.898293e-19
41	8069553	8081073	NM_173824	C3orf38	0.765055	2.092525e-21	3.625718e-17	8.843214e-19
42	8069553	8051707	NM_003618	MAP4K3	0.764866	2.169810e-21	3.759630e-17	8.951501e-19
43	8069553	7975068	NM_001123329	ZBTB1	0.764811	2.192664e-21	3.799228e-17	8.835414e-19
44	8069553	8140942	NM_001040057	FAM133B	0.764792	2.200615e-21	3.813005e-17	8.665921e-19
45	8069553	7942914	NM_152991	EED	0.764551	2.304239e-21	3.992555e-17	8.872344e-19
46	8069553	7932938	NM_025209	EPC1	0.764458	2.345579e-21	4.064185e-17	8.835184e-19
47	8069553	8147848	NM_181354	OXR1	0.763989	2.564684e-21	4.443827e-17	9.454951e-19
48	8069553	8020323	NM_003799	RNMT	0.763286	2.930854e-21	5.078291e-17	1.057977e-18
49	8069553	7930422	NM_005445	SMC3	0.763278	2.935583e-21	5.086485e-17	1.038058e-18
50	8069553	8142307	NM_015723	PNPLA8	0.763179	2.991336e-21	5.183089e-17	1.036618e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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