[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4211	8124524	NM_003510	HIST1H2AK		histone cluster 1, H2ak

Fetching correlation data, please wait...
Getting list of correlations for id 4211.
Getting list of p-values for id 4211.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124524	8113445	BC126144	FBXL17	-0.437714	3.021500e-6	5.235353e-2	5.235353e-2
2	8124524	7897441	NM_004285	H6PD	-0.434241	3.689906e-6	6.393500e-2	3.196750e-2
3	8124524	7941364	NM_032223	PCNXL3	-0.428241	5.184670e-6	8.983478e-2	2.994493e-2
4	8124524	8160295	NR_003009	SCARNA8	0.419151	8.574142e-6	1.485642e-1	3.714104e-2
5	8124524	8176482	ENST00000455422		0.410328	1.378062e-5	2.387767e-1	4.775535e-2
6	8124524	7920382	NM_181715	CRTC2	-0.406455	1.690121e-5	2.928472e-1	4.880786e-2
7	8124524	8040547	ENST00000437531		0.403804	1.940746e-5	3.362731e-1	4.803902e-2
8	8124524	8165694	NC_001807		0.398736	2.519712e-5	4.365906e-1	5.457382e-2
9	8124524	7911335	NC_001807		0.398736	2.519712e-5	4.365906e-1	4.851006e-2
10	8124524	7898574	NM_001032363	C1orf151	0.396759	2.786762e-5	4.828623e-1	4.828623e-2
11	8124524	7943124			0.393342	3.311575e-5	5.737967e-1	5.216333e-2
12	8124524	7933931			-0.387864	4.349641e-5	7.536622e-1	6.280519e-2
13	8124524	8122742			-0.384369	5.163096e-5	8.946096e-1	6.881612e-2
14	8124524	8145055	NM_006129	BMP1	-0.382396	5.683175e-5	9.847237e-1	7.033741e-2
15	8124524	8024446	NM_001077238	SPPL2B	-0.381457	5.947253e-5	1.030481e+0	6.869870e-2
16	8124524	8072847	NM_018957	SH3BP1	-0.378697	6.792112e-5	1.176869e+0	7.355433e-2
17	8124524	7998692	NM_002528	NTHL1	0.376761	7.449699e-5	1.290809e+0	7.592996e-2
18	8124524	8178011	NM_080686	BAT2	-0.376612	7.502910e-5	1.300029e+0	7.222385e-2
19	8124524	7946228	NM_000391	TPP1	-0.373025	8.890175e-5	1.540401e+0	8.107372e-2
20	8124524	8089993	NM_019069	WDR5B	0.370804	9.865014e-5	1.709311e+0	8.546555e-2
21	8124524	8110147	NM_198567	C5orf25	-0.367481	1.151069e-4	1.994457e+0	9.497414e-2
22	8124524	8086462	NM_032806	C3orf39	-0.366794	1.188132e-4	2.058676e+0	9.357620e-2
23	8124524	8118174	NM_080686	BAT2	-0.365554	1.257815e-4	2.179415e+0	9.475718e-2
24	8124524	7899043	NM_020451	SEPN1	-0.365496	1.261203e-4	2.185286e+0	9.105357e-2
25	8124524	7942168	NM_003824	FADD	0.364787	1.302866e-4	2.257476e+0	9.029903e-2
26	8124524	8089867	NM_173825	RABL3	0.363326	1.392723e-4	2.413171e+0	9.281428e-2
27	8124524	7940822			0.362305	1.458898e-4	2.527832e+0	9.362341e-2
28	8124524	8172244	NM_173794	FUNDC1	0.360262	1.600195e-4	2.772658e+0	9.902348e-2
29	8124524	8084951	NM_198565	LRRC33	-0.359650	1.644965e-4	2.850230e+0	9.828379e-2
30	8124524	8121112	ENST00000410598		0.358979	1.695377e-4	2.937580e+0	9.791934e-2
31	8124524	8098789	NM_005255	GAK	-0.358919	1.699952e-4	2.945507e+0	9.501634e-2
32	8124524	8085714			0.357998	1.771557e-4	3.069576e+0	9.592425e-2
33	8124524	8081878			-0.356935	1.857757e-4	3.218935e+0	9.754348e-2
34	8124524	8111129	NM_033414	ZNF622	0.356473	1.896405e-4	3.285901e+0	9.664415e-2
35	8124524	8006119	hsa-mir-423		0.352079	2.303135e-4	3.990642e+0	1.140183e-1
36	8124524	7981364	NM_032630	CINP	0.351848	2.326586e-4	4.031276e+0	1.119799e-1
37	8124524	7992692	NM_016333	SRRM2	-0.351580	2.354066e-4	4.078891e+0	1.102403e-1
38	8124524	8044351	CR590757	RPL22P15	0.350019	2.520333e-4	4.366980e+0	1.149205e-1
39	8124524	7999382	ENST00000410547		0.349678	2.558019e-4	4.432279e+0	1.136482e-1
40	8124524	8102518	NM_001001701	C4orf3	0.349392	2.590077e-4	4.487826e+0	1.121957e-1
41	8124524	8077042	NM_002972	SBF1	-0.349211	2.610579e-4	4.523351e+0	1.103256e-1
42	8124524	8074458	BC062599	C22orf39	0.349086	2.624846e-4	4.548070e+0	1.082874e-1
43	8124524	8013521			0.348218	2.725636e-4	4.722710e+0	1.098305e-1
44	8124524	8120057			0.347720	2.784971e-4	4.825520e+0	1.096709e-1
45	8124524	8081028	ENST00000362650		0.347511	2.810326e-4	4.869451e+0	1.082100e-1
46	8124524	8059576	AK304882	POLR2A	-0.347458	2.816723e-4	4.880536e+0	1.060986e-1
47	8124524	7932862	ENST00000410143		0.344914	3.142688e-4	5.445335e+0	1.158582e-1
48	8124524	8126524	NM_199184	C6orf108	0.344898	3.144856e-4	5.449092e+0	1.135227e-1
49	8124524	8062293	NM_014902	DLGAP4	-0.344621	3.182409e-4	5.514159e+0	1.125339e-1
50	8124524	7971602	NM_018191	RCBTB1	0.343765	3.301098e-4	5.719812e+0	1.143962e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation