[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2920	8011924	NM_031220	PITPNM3		PITPNM family member 3

Fetching correlation data, please wait...
Getting list of correlations for id 2920.
Getting list of p-values for id 2920.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8011924	8049670	NM_002081	GPC1	0.759365	6.121414e-21	1.060657e-16	1.060657e-16
2	8011924	7896822	NM_198576	AGRN	0.750410	3.125650e-20	5.415814e-16	2.707907e-16
3	8011924	8007259	ENST00000225928		0.750077	3.316418e-20	5.746357e-16	1.915452e-16
4	8011924	8133372	NM_000501	ELN	0.747094	5.617782e-20	9.733930e-16	2.433483e-16
5	8011924	7994961	NM_001330	CTF1	0.745141	7.900605e-20	1.368938e-15	2.737876e-16
6	8011924	8024655	NM_001135580	C19orf71	0.742746	1.195384e-19	2.071241e-15	3.452069e-16
7	8011924	8060126	NM_198998	AQP12A	0.742647	1.215895e-19	2.106781e-15	3.009687e-16
8	8011924	7953418	NM_002286	LAG3	0.739678	2.018440e-19	3.497352e-15	4.371690e-16
9	8011924	7991283	NM_016321	RHCG	0.738371	2.517579e-19	4.362209e-15	4.846899e-16
10	8011924	8132092	NM_006774	INMT	0.737825	2.759917e-19	4.782108e-15	4.782108e-16
11	8011924	8110237	NM_133369	UNC5A	0.736955	3.193674e-19	5.533678e-15	5.030617e-16
12	8011924	8137151	NM_198455	SSPO	0.733930	5.281856e-19	9.151871e-15	7.626560e-16
13	8011924	8049729	NM_198998	AQP12A	0.733639	5.541231e-19	9.601291e-15	7.385608e-16
14	8011924	8137330	ENST00000356058		0.733379	5.783669e-19	1.002136e-14	7.158117e-16
15	8011924	8064418	NM_080489	SDCBP2	0.732430	6.760473e-19	1.171387e-14	7.809248e-16
16	8011924	8159531	NM_207510	LCNL1	0.731493	7.881586e-19	1.365642e-14	8.535265e-16
17	8011924	8153101	NM_152888	COL22A1	0.730599	9.118381e-19	1.579942e-14	9.293776e-16
18	8011924	7952893	BC024764	IQSEC3	0.729355	1.115756e-18	1.933271e-14	1.074039e-15
19	8011924	7931643	NM_000773	CYP2E1	0.728779	1.224655e-18	2.121959e-14	1.116821e-15
20	8011924	7991893	BC016613	C16orf11	0.728295	1.324002e-18	2.294099e-14	1.147049e-15
21	8011924	8098848	NM_213613	SLC26A1	0.728213	1.341769e-18	2.324884e-14	1.107087e-15
22	8011924	7916304	NM_147193	GLIS1	0.727693	1.458770e-18	2.527610e-14	1.148914e-15
23	8011924	8086419	NR_027753	HHATL	0.727400	1.528868e-18	2.649069e-14	1.151769e-15
24	8011924	8019243	NM_001007533	DYSFIP1	0.726077	1.889414e-18	3.273787e-14	1.364078e-15
25	8011924	8045229	NM_032995	ARHGEF4	0.725082	2.213649e-18	3.835590e-14	1.534236e-15
26	8011924	7915385	NM_001956	EDN2	0.724875	2.287360e-18	3.963309e-14	1.524350e-15
27	8011924	7991815	NM_006849	PDIA2	0.724805	2.313203e-18	4.008087e-14	1.484477e-15
28	8011924	8142830	NM_199349	KCP	0.723883	2.676520e-18	4.637606e-14	1.656288e-15
29	8011924	7913226	NM_012400	PLA2G2D	0.723194	2.983641e-18	5.169754e-14	1.782674e-15
30	8011924	8005512	NM_002767	PRPSAP2	-0.722708	3.220667e-18	5.580450e-14	1.860150e-15
31	8011924	8033487	NM_032447	FBN3	0.722138	3.522571e-18	6.103559e-14	1.968890e-15
32	8011924	8004152	NM_015253	WSCD1	0.720972	4.227062e-18	7.324231e-14	2.288822e-15
33	8011924	7949015	NM_001144936	C11orf95	0.720721	4.395214e-18	7.615588e-14	2.307754e-15
34	8011924	8062427	NM_080607	VSTM2L	0.720640	4.451385e-18	7.712915e-14	2.268505e-15
35	8011924	7907053	NM_001080426	DUSP27	0.720309	4.686413e-18	8.120148e-14	2.320042e-15
36	8011924	8063796	NM_001794	CDH4	0.720301	4.692840e-18	8.131284e-14	2.258690e-15
37	8011924	7992147	NM_021098	CACNA1H	0.719860	5.025322e-18	8.707375e-14	2.353345e-15
38	8011924	7933501	NM_001080520	DRGX	0.719490	5.322071e-18	9.221553e-14	2.426724e-15
39	8011924	7984819	NM_025055	CCDC33	0.719137	5.621438e-18	9.740266e-14	2.497504e-15
40	8011924	8164562	NM_199350	C9orf50	0.718814	5.908931e-18	1.023840e-13	2.559601e-15
41	8011924	7927307	NM_001630	ANXA8L2	0.718660	6.051447e-18	1.048534e-13	2.557401e-15
42	8011924	8171087	NM_013239	PPP2R3B	0.718614	6.094562e-18	1.056005e-13	2.514297e-15
43	8011924	8144894	NM_018142	INTS10	-0.718581	6.125809e-18	1.061419e-13	2.468416e-15
44	8011924	8038109	NM_017708	FAM83E	0.718546	6.158926e-18	1.067157e-13	2.425357e-15
45	8011924	8059748	NM_004826	ECEL1	0.717829	6.878977e-18	1.191920e-13	2.648712e-15
46	8011924	8067867	ENST00000364942		0.717663	7.055961e-18	1.222586e-13	2.657797e-15
47	8011924	8005328	NM_016239	MYO15A	0.716877	7.961480e-18	1.379486e-13	2.935076e-15
48	8011924	7927367	NM_001040084	ANXA8	0.716352	8.627662e-18	1.494915e-13	3.114406e-15
49	8011924	8060294	NM_005018	PDCD1	0.716249	8.763801e-18	1.518504e-13	3.098988e-15
50	8011924	7992302	NM_020825	CRAMP1L	0.716172	8.867838e-18	1.536530e-13	3.073061e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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