[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3579	8084206	NM_032047	B3GNT5		UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5

Fetching correlation data, please wait...
Getting list of correlations for id 3579.
Getting list of p-values for id 3579.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8084206	8100798	NM_014465	SULT1B1	0.684724	8.001675e-16	1.386450e-11	1.386450e-11
2	8084206	8128123	NM_021244	RRAGD	0.681610	1.212082e-15	2.100174e-11	1.050087e-11
3	8084206	8160718	NR_023917	PTENP1	0.661155	1.641252e-14	2.843798e-10	9.479326e-11
4	8084206	7928959	NM_000314	PTEN	0.660801	1.713877e-14	2.969635e-10	7.424087e-11
5	8084206	8022251	NM_001042388	PPP4R1	0.660142	1.857576e-14	3.218622e-10	6.437244e-11
6	8084206	8151756	NM_018710	TMEM55A	0.652722	4.533972e-14	7.856013e-10	1.309335e-10
7	8084206	7933723	NM_152230	IPMK	0.652413	4.703437e-14	8.149646e-10	1.164235e-10
8	8084206	8097903	NM_003264	TLR2	0.651577	5.191982e-14	8.996146e-10	1.124518e-10
9	8084206	7961365	NM_018050	MANSC1	0.648436	7.507550e-14	1.300833e-9	1.445370e-10
10	8084206	7979085	NM_002863	PYGL	0.646185	9.753420e-14	1.689975e-9	1.689975e-10
11	8084206	7985493	NM_023003	TM6SF1	0.646065	9.889982e-14	1.713637e-9	1.557852e-10
12	8084206	8157233	NM_032303	HSDL2	0.645913	1.006480e-13	1.743928e-9	1.453273e-10
13	8084206	8098177	NM_007246	KLHL2	0.645476	1.058632e-13	1.834292e-9	1.410994e-10
14	8084206	8124088	NM_022113	KIF13A	0.644673	1.161245e-13	2.012089e-9	1.437206e-10
15	8084206	7983910	NM_020980	AQP9	0.643138	1.385075e-13	2.399919e-9	1.599946e-10
16	8084206	7940191	NM_004177	STX3	0.641546	1.660944e-13	2.877917e-9	1.798698e-10
17	8084206	8149264	NM_024607	PPP1R3B	0.640036	1.971451e-13	3.415933e-9	2.009373e-10
18	8084206	8113103	NM_001145678	C5orf36	0.639119	2.186647e-13	3.788803e-9	2.104891e-10
19	8084206	8068266	NM_000629	IFNAR1	0.638969	2.223915e-13	3.853378e-9	2.028094e-10
20	8084206	7957570	NM_005761	PLXNC1	0.635767	3.183795e-13	5.516562e-9	2.758281e-10
21	8084206	8046003	NM_012198	GCA	0.634545	3.647088e-13	6.319309e-9	3.009195e-10
22	8084206	8093961	NM_014743	KIAA0232	0.634165	3.804103e-13	6.591370e-9	2.996077e-10
23	8084206	8116372	NM_018434	RNF130	0.631516	5.093998e-13	8.826370e-9	3.837552e-10
24	8084206	7922846	NM_052966	FAM129A	0.626969	8.354863e-13	1.447647e-8	6.031863e-10
25	8084206	7946478	NM_015213	DENND5A	0.626132	9.143817e-13	1.584349e-8	6.337397e-10
26	8084206	8120943	NM_016230	CYB5R4	0.624833	1.051187e-12	1.821391e-8	7.005351e-10
27	8084206	8166065	NM_138636	TLR8	0.623143	1.259070e-12	2.181591e-8	8.079965e-10
28	8084206	8101511	NM_014991	WDFY3	0.623109	1.263686e-12	2.189589e-8	7.819962e-10
29	8084206	8046726	NM_001130445	SSFA2	0.622075	1.410364e-12	2.443738e-8	8.426684e-10
30	8084206	8083901	NM_022763	FNDC3B	0.621945	1.430022e-12	2.477799e-8	8.259330e-10
31	8084206	7950838	NM_007166	PICALM	0.621686	1.469749e-12	2.546633e-8	8.214946e-10
32	8084206	8038899	NM_002029	FPR1	0.621533	1.493714e-12	2.588159e-8	8.087997e-10
33	8084206	8009502	NM_000891	KCNJ2	0.621348	1.523295e-12	2.639413e-8	7.998223e-10
34	8084206	8096675	NM_001127208	TET2	0.620448	1.675114e-12	2.902470e-8	8.536678e-10
35	8084206	8020129	NM_003574	VAPA	0.620404	1.683017e-12	2.916164e-8	8.331896e-10
36	8084206	8093145	NM_032898	C3orf34	0.620153	1.728167e-12	2.994396e-8	8.317766e-10
37	8084206	7980005	NM_001005743	NUMB	0.618768	1.998723e-12	3.463187e-8	9.359966e-10
38	8084206	8142120	NM_005746	NAMPT	0.618443	2.068076e-12	3.583355e-8	9.429883e-10
39	8084206	7957759	NM_181861	APAF1	0.616690	2.483145e-12	4.302545e-8	1.103217e-9
40	8084206	8094460	NM_005349	RBPJ	0.616289	2.588817e-12	4.485643e-8	1.121411e-9
41	8084206	7933084	NM_005746	NAMPT	0.615979	2.673590e-12	4.632529e-8	1.129885e-9
42	8084206	8084794	NM_002182	IL1RAP	0.615420	2.833225e-12	4.909129e-8	1.168840e-9
43	8084206	8064790	NM_014737	RASSF2	0.614955	2.972943e-12	5.151218e-8	1.197958e-9
44	8084206	7916343	NM_018982	YIPF1	0.614583	3.089491e-12	5.353162e-8	1.216628e-9
45	8084206	8000184	NM_005849	IGSF6	0.613859	3.328950e-12	5.768072e-8	1.281794e-9
46	8084206	8166243	NM_004726	REPS2	0.613791	3.352194e-12	5.808346e-8	1.262684e-9
47	8084206	8103951	NM_001995	ACSL1	0.613008	3.633425e-12	6.295635e-8	1.339497e-9
48	8084206	7929511	NM_001776	ENTPD1	0.612767	3.724420e-12	6.453302e-8	1.344438e-9
49	8084206	8169580	NM_001560	IL13RA1	0.612461	3.843029e-12	6.658817e-8	1.358942e-9
50	8084206	8018305	NM_016185	HN1	0.612026	4.018136e-12	6.962225e-8	1.392445e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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