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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
2490 7917754 NM_003567 BCAR3 link to infopage breast cancer anti-estrogen resistance 3

Fetching correlation data, please wait...
Getting list of correlations for id 2490.
Getting list of p-values for id 2490.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7917754 8008228 NM_138281 DLX4 link to infopage 0.795914 3.485972e-24 6.040144e-20 6.040144e-20
2 7917754 8090639 NM_014602 PIK3R4 link to infopage -0.781535 7.816486e-23 1.354363e-18 6.771813e-19
3 7917754 7942123 NM_053056 CCND1 link to infopage 0.776958 2.002858e-22 3.470353e-18 1.156784e-18
4 7917754 7898616 NM_022819 PLA2G2F link to infopage 0.767765 1.241841e-21 2.151737e-17 5.379343e-18
5 7917754 7936144 NM_000494 COL17A1 link to infopage 0.763928 2.594654e-21 4.495756e-17 8.991513e-18
6 7917754 7966389 NM_144671 FAM109A link to infopage 0.761106 4.421614e-21 7.661331e-17 1.276888e-17
7 7917754 7947991 NM_015231 NUP160 link to infopage -0.756408 1.056792e-20 1.831104e-16 2.615862e-17
8 7917754 8009951 NM_000213 ITGB4 link to infopage 0.756183 1.101340e-20 1.908292e-16 2.385365e-17
9 7917754 8016168 NM_133373 PLCD3 link to infopage 0.756120 1.114233e-20 1.930632e-16 2.145147e-17
10 7917754 8155083 NM_001216 CA9 link to infopage 0.755693 1.204626e-20 2.087255e-16 2.087255e-17
11 7917754 7929315 NM_183374 CYP26C1 link to infopage 0.754190 1.583781e-20 2.744218e-16 2.494743e-17
12 7917754 8083523 NM_003875 GMPS link to infopage -0.749471 3.693459e-20 6.399656e-16 5.333047e-17
13 7917754 8087611 NM_007312 HYAL1 link to infopage 0.749240 3.847693e-20 6.666898e-16 5.128383e-17
14 7917754 8115691 NM_003062 SLIT3 link to infopage 0.747901 4.874728e-20 8.446441e-16 6.033172e-17
15 7917754 8041582 NM_138370 PKDCC link to infopage 0.747803 4.959870e-20 8.593967e-16 5.729311e-17
16 7917754 8016414 NM_003726 SKAP1 link to infopage -0.747548 5.187124e-20 8.987730e-16 5.617331e-17
17 7917754 8157804 NM_182487 OLFML2A link to infopage 0.747264 5.452609e-20 9.447736e-16 5.557492e-17
18 7917754 7913450 NM_005529 HSPG2 link to infopage 0.746810 5.904681e-20 1.023104e-15 5.683911e-17
19 7917754 8179070 NM_033229 TRIM15 link to infopage 0.745883 6.943737e-20 1.203141e-15 6.332323e-17
20 7917754 8177760 NM_033229 TRIM15 link to infopage 0.745883 6.943737e-20 1.203141e-15 6.015707e-17
21 7917754 8117849 NM_033229 TRIM15 link to infopage 0.745883 6.943737e-20 1.203141e-15 5.729244e-17
22 7917754 8162283 NM_004560 ROR2 link to infopage 0.745571 7.331988e-20 1.270414e-15 5.774607e-17
23 7917754 7945688 NR_003512 INS-IGF2 link to infopage 0.743418 1.064729e-19 1.844857e-15 8.021116e-17
24 7917754 8076865 NM_001001694 IL17REL link to infopage 0.743249 1.096221e-19 1.899423e-15 7.914262e-17
25 7917754 7899075 NM_004455 EXTL1 link to infopage 0.742333 1.283429e-19 2.223798e-15 8.895192e-17
26 7917754 8148658 NM_014789 ZNF623 link to infopage -0.741310 1.529103e-19 2.649476e-15 1.019029e-16
27 7917754 7946860 NM_000352 ABCC8 link to infopage 0.740694 1.698305e-19 2.942653e-15 1.089871e-16
28 7917754 8107406 ENST00000410774 link to infopage 0.740514 1.751315e-19 3.034504e-15 1.083752e-16
29 7917754 8060134 NM_004321 KIF1A link to infopage 0.739667 2.022122e-19 3.503731e-15 1.208183e-16
30 7917754 8064242 NR_027686 NCRNA00176 link to infopage 0.739506 2.078231e-19 3.600951e-15 1.200317e-16
31 7917754 7999727 NM_001171 ABCC6 link to infopage 0.739148 2.208136e-19 3.826037e-15 1.234206e-16
32 7917754 8125072 NM_025258 C6orf27 link to infopage 0.736969 3.186184e-19 5.520701e-15 1.725219e-16
33 7917754 7987701 NM_016642 SPTBN5 link to infopage 0.736699 3.333453e-19 5.775874e-15 1.750265e-16
34 7917754 8096556 NM_015143 METAP1 link to infopage -0.735153 4.313324e-19 7.473697e-15 2.198146e-16
35 7917754 7935983 NM_005029 PITX3 link to infopage 0.734950 4.461079e-19 7.729711e-15 2.208489e-16
36 7917754 8030251 NM_017636 TRPM4 link to infopage 0.734726 4.629560e-19 8.021638e-15 2.228233e-16
37 7917754 8035408 NM_000923 PDE4C link to infopage 0.734420 4.870616e-19 8.439316e-15 2.280896e-16
38 7917754 7939424 NR_024625 API5 link to infopage -0.733932 5.279642e-19 9.148036e-15 2.407378e-16
39 7917754 8010071 NM_001088 AANAT link to infopage 0.733900 5.307245e-19 9.195863e-15 2.357914e-16
40 7917754 8175815 NM_001039582 PNCK link to infopage 0.733023 6.132907e-19 1.062649e-14 2.656622e-16
41 7917754 7927307 NM_001630 ANXA8L2 link to infopage 0.732986 6.170384e-19 1.069142e-14 2.607665e-16
42 7917754 8042119 NM_022894 PAPOLG link to infopage -0.732863 6.297164e-19 1.091110e-14 2.597880e-16
43 7917754 8038319 NM_002152 HRC link to infopage 0.732262 6.949176e-19 1.204084e-14 2.800195e-16
44 7917754 8155942 NM_001013735 FOXB2 link to infopage 0.732207 7.012139e-19 1.214993e-14 2.761348e-16
45 7917754 8086540 NM_020208 SLC6A20 link to infopage 0.731817 7.474538e-19 1.295113e-14 2.878030e-16
46 7917754 7991893 BC016613 C16orf11 link to infopage 0.730814 8.804414e-19 1.525541e-14 3.316393e-16
47 7917754 8079021 NM_001904 CTNNB1 link to infopage -0.730669 9.015081e-19 1.562043e-14 3.323496e-16
48 7917754 7942717 NM_000260 MYO7A link to infopage 0.730557 9.180731e-19 1.590745e-14 3.314053e-16
49 7917754 8051622 NM_001031684 SRSF7 link to infopage -0.730458 9.329628e-19 1.616545e-14 3.299071e-16
50 7917754 8068496 NM_009586 SIM2 link to infopage 0.730275 9.611849e-19 1.665445e-14 3.330890e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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