[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3022	8038587	NM_032298	SYT3		synaptotagmin III

Fetching correlation data, please wait...
Getting list of correlations for id 3022.
Getting list of p-values for id 3022.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.153 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8038587	7942717	NM_000260	MYO7A	0.775543	2.667471e-22	4.621928e-18	4.621928e-18
2	8038587	7906307	NM_018240	KIRREL	0.769630	8.635710e-22	1.496309e-17	7.481547e-18
3	8038587	7955305	NM_001652	AQP6	0.769627	8.640454e-22	1.497132e-17	4.990438e-18
4	8038587	8116384	NM_175062	RASGEF1C	0.766735	1.515345e-21	2.625638e-17	6.564096e-18
5	8038587	8028407	NM_000540	RYR1	0.766683	1.530648e-21	2.652154e-17	5.304307e-18
6	8038587	7955184	NM_006262	PRPH	0.765838	1.801114e-21	3.120790e-17	5.201317e-18
7	8038587	7937560	NM_002457	MUC2	0.765105	2.072677e-21	3.591327e-17	5.130468e-18
8	8038587	8114550	NM_004883	NRG2	0.764655	2.258985e-21	3.914144e-17	4.892679e-18
9	8038587	8163548	NM_138424	KIF12	0.763265	2.942546e-21	5.098549e-17	5.665054e-18
10	8038587	7936144	NM_000494	COL17A1	0.763121	3.024360e-21	5.240309e-17	5.240309e-18
11	8038587	7897132	NM_022114	PRDM16	0.762719	3.263493e-21	5.654655e-17	5.140595e-18
12	8038587	8100902	NM_032217	ANKRD17	-0.762305	3.528376e-21	6.113617e-17	5.094681e-18
13	8038587	7996027	NM_002996	CX3CL1	0.762026	3.719454e-21	6.444698e-17	4.957460e-18
14	8038587	7896921	NM_152228	TAS1R3	0.760104	5.333270e-21	9.240957e-17	6.600684e-18
15	8038587	7936762	NM_001001976	ATE1	-0.759847	5.596186e-21	9.696511e-17	6.464341e-18
16	8038587	7936882	NM_001146340	NKX1-2	0.758815	6.780187e-21	1.174803e-16	7.342519e-18
17	8038587	7970241	NM_000504	F10	0.758486	7.205814e-21	1.248551e-16	7.344420e-18
18	8038587	8062108	NM_006404	PROCR	0.756252	1.087545e-20	1.884388e-16	1.046882e-17
19	8038587	8014269	NM_139285	GAS2L2	0.756223	1.093358e-20	1.894462e-16	9.970852e-18
20	8038587	8067409	NM_005560	LAMA5	0.753991	1.642003e-20	2.845099e-16	1.422549e-17
21	8038587	8043114	NM_031283	TCF7L1	0.753708	1.728532e-20	2.995028e-16	1.426204e-17
22	8038587	8115691	NM_003062	SLIT3	0.753593	1.764855e-20	3.057965e-16	1.389984e-17
23	8038587	8079021	NM_001904	CTNNB1	-0.753313	1.856630e-20	3.216983e-16	1.398688e-17
24	8038587	7927307	NM_001630	ANXA8L2	0.753090	1.932809e-20	3.348978e-16	1.395407e-17
25	8038587	7990244	NM_005477	HCN4	0.753023	1.956187e-20	3.389485e-16	1.355794e-17
26	8038587	7913450	NM_005529	HSPG2	0.752755	2.053044e-20	3.557310e-16	1.368196e-17
27	8038587	8096556	NM_015143	METAP1	-0.752571	2.122493e-20	3.677644e-16	1.362090e-17
28	8038587	7927367	NM_001040084	ANXA8	0.752048	2.331445e-20	4.039695e-16	1.442748e-17
29	8038587	7935535	NM_018058	CRTAC1	0.752046	2.332252e-20	4.041093e-16	1.393480e-17
30	8038587	8159734	NM_000718	CACNA1B	0.751307	2.662707e-20	4.613673e-16	1.537891e-17
31	8038587	8111216	ENST00000426411		0.751262	2.684496e-20	4.651426e-16	1.500460e-17
32	8038587	8148517	NM_001702	BAI1	0.750426	3.116456e-20	5.399884e-16	1.687464e-17
33	8038587	7911413	NM_003327	TNFRSF4	0.749064	3.969927e-20	6.878692e-16	2.084452e-17
34	8038587	8107897	NM_003687	PDLIM4	0.748106	4.701808e-20	8.146823e-16	2.396124e-17
35	8038587	8042537	NM_001692	ATP6V1B1	0.747596	5.143706e-20	8.912500e-16	2.546429e-17
36	8038587	7920552	NM_002249	KCNN3	0.747582	5.155839e-20	8.933522e-16	2.481534e-17
37	8038587	7946860	NM_000352	ABCC8	0.747524	5.209448e-20	9.026411e-16	2.439571e-17
38	8038587	7942123	NM_053056	CCND1	0.747491	5.239129e-20	9.077838e-16	2.388905e-17
39	8038587	8090639	NM_014602	PIK3R4	-0.747006	5.704874e-20	9.884836e-16	2.534573e-17
40	8038587	7935983	NM_005029	PITX3	0.746592	6.134314e-20	1.062893e-15	2.657232e-17
41	8038587	8076882	NM_001080447	TTLL8	0.746277	6.481637e-20	1.123073e-15	2.739203e-17
42	8038587	8054804	NM_019044	CCDC93	-0.745899	6.924142e-20	1.199746e-15	2.856538e-17
43	8038587	7931519	NM_152643	KNDC1	0.744700	8.529889e-20	1.477974e-15	3.437149e-17
44	8038587	7987701	NM_016642	SPTBN5	0.744096	9.471945e-20	1.641204e-15	3.730009e-17
45	8038587	8156783	NM_001855	COL15A1	0.744090	9.480724e-20	1.642725e-15	3.650500e-17
46	8038587	8009713	NM_178233	OTOP3	0.742942	1.155914e-19	2.002852e-15	4.354026e-17
47	8038587	8116033	NM_000505	F12	0.742298	1.291085e-19	2.237063e-15	4.759709e-17
48	8038587	8090044	NM_001031702	SEMA5B	0.742200	1.312895e-19	2.274854e-15	4.739279e-17
49	8038587	8033674	NM_024690	MUC16	0.741959	1.368438e-19	2.371093e-15	4.838966e-17
50	8038587	8143247	NM_020910	KIAA1549	0.741956	1.369013e-19	2.372088e-15	4.744177e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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