[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3374	7982812	NM_001077268	ZFYVE19		zinc finger, FYVE domain containing 19

Fetching correlation data, please wait...
Getting list of correlations for id 3374.
Getting list of p-values for id 3374.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7982812	8171066	NR_024540	WASH7P	0.536385	3.690969e-9	6.395343e-5	6.395343e-5
2	7982812	8159790	NR_024077	WASH2P	0.523372	1.014015e-8	1.756984e-4	8.784922e-5
3	7982812	7986541	NR_003659	WASH3P	0.502692	4.641938e-8	8.043085e-4	2.681028e-4
4	7982812	7911309	NR_024540	WASH7P	0.499576	5.787633e-8	1.002823e-3	2.507058e-4
5	7982812	7914500	AF258548	C1orf91	0.498659	6.172856e-8	1.069571e-3	2.139141e-4
6	7982812	7998119	NR_024540	WASH7P	0.489680	1.149383e-7	1.991536e-3	3.319227e-4
7	7982812	8044649	NR_024077	WASH2P	0.486506	1.425838e-7	2.470550e-3	3.529357e-4
8	7982812	8180111	NM_021976	RXRB	0.461718	7.135595e-7	1.236385e-2	1.545481e-3
9	7982812	8093624	NM_001145856	SH3BP2	0.455033	1.078470e-6	1.868664e-2	2.076294e-3
10	7982812	7945521	NM_182612	PDDC1	0.452102	1.289038e-6	2.233516e-2	2.233516e-3
11	7982812	7987772	NM_139265	EHD4	0.451929	1.302597e-6	2.257009e-2	2.051827e-3
12	7982812	8013622	NM_144610	SGK494	0.448078	1.642288e-6	2.845593e-2	2.371327e-3
13	7982812	7960559	NM_080730	IFFO1	0.447981	1.651794e-6	2.862063e-2	2.201587e-3
14	7982812	8080198	NM_144641	PPM1M	0.443419	2.165457e-6	3.752087e-2	2.680062e-3
15	7982812	8175900	NM_001666	ARHGAP4	0.441751	2.388367e-6	4.138323e-2	2.758882e-3
16	7982812	8042867	NM_012477	WBP1	0.439364	2.745644e-6	4.757377e-2	2.973361e-3
17	7982812	7995926	NM_032206	NLRC5	0.438965	2.810075e-6	4.869018e-2	2.864128e-3
18	7982812	7985450	NR_003246	GOLGA6L5	0.438211	2.935694e-6	5.086677e-2	2.825932e-3
19	7982812	7985409	NR_003246	GOLGA6L5	0.438211	2.935694e-6	5.086677e-2	2.677198e-3
20	7982812	8159566	NM_016219	MAN1B1	0.436632	3.216341e-6	5.572954e-2	2.786477e-3
21	7982812	8048116	ENST00000384544		0.436377	3.263896e-6	5.655352e-2	2.693025e-3
22	7982812	8001552	NM_020313	CIAPIN1	0.434737	3.586440e-6	6.214225e-2	2.824648e-3
23	7982812	7907690	NM_022371	TOR3A	0.432311	4.119364e-6	7.137622e-2	3.103314e-3
24	7982812	8178903	NM_021976	RXRB	0.432072	4.175617e-6	7.235092e-2	3.014622e-3
25	7982812	8134599	NM_006693	CPSF4	0.426313	5.775389e-6	1.000702e-1	4.002807e-3
26	7982812	7963696	AK054879		0.426220	5.805322e-6	1.005888e-1	3.868801e-3
27	7982812	8024282	NM_170711	DAZAP1	0.425666	5.987429e-6	1.037442e-1	3.842377e-3
28	7982812	7931607	NM_138384	MTG1	0.425458	6.057405e-6	1.049567e-1	3.748452e-3
29	7982812	8036938	NM_024876	ADCK4	0.424738	6.304509e-6	1.092382e-1	3.766836e-3
30	7982812	8024660	NM_006339	HMG20B	0.424726	6.308759e-6	1.093119e-1	3.643729e-3
31	7982812	7945831	NM_020896	OSBPL5	0.424455	6.404306e-6	1.109674e-1	3.579594e-3
32	7982812	8006788	NM_005937	MLLT6	0.423902	6.603613e-6	1.144208e-1	3.575650e-3
33	7982812	8085206	NM_003656	CAMK1	0.423168	6.877256e-6	1.191622e-1	3.610976e-3
34	7982812	7905664	NM_024330	SLC27A3	0.422998	6.942331e-6	1.202898e-1	3.537934e-3
35	7982812	8029147	NM_199002	ARHGEF1	0.422334	7.201089e-6	1.247733e-1	3.564950e-3
36	7982812	7985099	NM_003978	PSTPIP1	0.422177	7.263833e-6	1.258604e-1	3.496123e-3
37	7982812	8134789	NM_013440	PILRB	0.421971	7.346831e-6	1.272985e-1	3.440501e-3
38	7982812	7997863	NM_174917	ACSF3	0.421807	7.413344e-6	1.284510e-1	3.380290e-3
39	7982812	7925876	NM_002627	PFKP	0.419913	8.224646e-6	1.425084e-1	3.654062e-3
40	7982812	7911359	NM_015658	NOC2L	0.419505	8.410212e-6	1.457237e-1	3.643094e-3
41	7982812	8116177	NM_153373	AGXT2L2	0.417425	9.418010e-6	1.631859e-1	3.980143e-3
42	7982812	hsa-miR-335-3p			-0.415724	1.032595e-5	1.789178e-1	4.259948e-3
43	7982812	8034521	NM_013312	HOOK2	0.414894	1.079829e-5	1.871020e-1	4.351210e-3
44	7982812	7945734	AB029488	C11orf21	0.414776	1.086674e-5	1.882881e-1	4.279274e-3
45	7982812	8037389	NM_019108	C19orf61	0.414370	1.110677e-5	1.924470e-1	4.276599e-3
46	7982812	7991722	NR_003246	GOLGA6L5	0.413889	1.139733e-5	1.974815e-1	4.293075e-3
47	7982812	7991110	NR_003246	GOLGA6L5	0.412059	1.256904e-5	2.177837e-1	4.633695e-3
48	7982812	8087640	NM_007182	RASSF1	0.411986	1.261814e-5	2.186346e-1	4.554887e-3
49	7982812	7973584	NM_017999	RNF31	0.409736	1.421981e-5	2.463867e-1	5.028299e-3
50	7982812	8005699	NM_015510	DHRS7B	0.409276	1.457015e-5	2.524569e-1	5.049139e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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