[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4696	8074593	NM_015672	RIMBP3		RIMS binding protein 3
6594	8074771	NM_015672	RIMBP3		RIMS binding protein 3

Fetching correlation data, please wait...
Getting list of correlations for id 4696.
Getting list of p-values for id 4696.
1 of 2 done.
Getting list of correlations for id 6594.
Getting list of p-values for id 6594.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.210 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8074771	8074593	NM_015672	RIMBP3	0.961472	1.402372e-59	4.859779e-55	4.859779e-55
2	8074593	8074771	NM_015672	RIMBP3	0.961472	1.402372e-59	4.859779e-55	2.429889e-55
3	8074771	7959473	NM_003677	DENR	-0.545030	1.841274e-9	6.380749e-5	2.126916e-5
4	8074771	8095269	NM_000938	POLR2B	-0.536314	3.711781e-9	1.286280e-4	3.215701e-5
5	8074771	7938669	NM_014267	C11orf58	-0.533622	4.590823e-9	1.590904e-4	3.181808e-5
6	8074771	8020086	ENST00000384364		-0.532081	5.180565e-9	1.795273e-4	2.992122e-5
7	8074771	8048772	NM_032276	RHBDD1	-0.530910	5.676562e-9	1.967156e-4	2.810222e-5
8	8074771	8083656	NM_022736	MFSD1	-0.528717	6.729959e-9	2.332200e-4	2.915250e-5
9	8074771	7927854	NM_012207	HNRNPH3	-0.528023	7.101029e-9	2.460790e-4	2.734212e-5
10	8074771	8043310	NM_022780	RMND5A	-0.525607	8.550062e-9	2.962939e-4	2.962939e-5
11	8074771	8160622	NM_018225	SMU1	-0.523351	1.015624e-8	3.519542e-4	3.199583e-5
12	8074771	8051443	NM_003162	STRN	-0.521142	1.200643e-8	4.160710e-4	3.467258e-5
13	8074771	8003758	NM_000430	PAFAH1B1	-0.520292	1.280168e-8	4.436295e-4	3.412535e-5
14	8074771	7946728	NM_148976	PSMA1	-0.519259	1.383521e-8	4.794454e-4	3.424610e-5
15	8074771	7987869	NM_015497	TMEM87A	-0.517602	1.566128e-8	5.427258e-4	3.618172e-5
16	8074771	8088718	NM_003968	UBA3	-0.517017	1.635991e-8	5.669364e-4	3.543352e-5
17	8074771	8092201	NM_024665	TBL1XR1	-0.515787	1.792575e-8	6.211989e-4	3.654111e-5
18	8074771	8104463	NM_005885	MARCH6	-0.514908	1.913238e-8	6.630135e-4	3.683408e-5
19	8074771	7967976	NM_005870	SAP18	-0.514713	1.941059e-8	6.726545e-4	3.540287e-5
20	8074771	7975344	NM_018375	SLC39A9	-0.513536	2.117125e-8	7.336686e-4	3.668343e-5
21	8074771	8008113	NM_005831	CALCOCO2	-0.513474	2.126888e-8	7.370519e-4	3.509771e-5
22	8074771	7966135	NM_014325	CORO1C	-0.512985	2.204721e-8	7.640239e-4	3.472836e-5
23	8074771	8041122	NM_002709	PPP1CB	-0.512708	2.250211e-8	7.797880e-4	3.390383e-5
24	8074771	8145894	NM_004674	ASH2L	-0.512622	2.264360e-8	7.846913e-4	3.269547e-5
25	8074771	8116760	NM_031480	RIOK1	-0.512299	2.318728e-8	8.035321e-4	3.214128e-5
26	8074771	7974587	NM_018477	ACTR10	-0.511691	2.424490e-8	8.401827e-4	3.231472e-5
27	8074771	8105523	NM_004520	KIF2A	-0.510675	2.611247e-8	9.049014e-4	3.351487e-5
28	8074771	7966301	NM_016238	ANAPC7	-0.510516	2.641754e-8	9.154734e-4	3.269548e-5
29	8074771	8104449	NM_012073	CCT5	-0.509668	2.810118e-8	9.738184e-4	3.357994e-5
30	8074771	8023450	NR_024546	TXNL1	-0.509598	2.824591e-8	9.788338e-4	3.262779e-5
31	8074771	8001387	NM_002968	SALL1	0.509529	2.838628e-8	9.836982e-4	3.173220e-5
32	8074771	7988286	NM_025137	SPG11	-0.509121	2.924057e-8	1.013303e-3	3.166571e-5
33	8074771	7935692	NM_001100626	ERLIN1	-0.508962	2.958184e-8	1.025129e-3	3.106451e-5
34	8074771	8089759	NM_018266	TMEM39A	-0.508559	3.045852e-8	1.055509e-3	3.104439e-5
35	8074771	8161747	NM_001102420	ZFAND5	-0.508547	3.048403e-8	1.056394e-3	3.018268e-5
36	8074771	8091048	NR_023350	COPB2	-0.507791	3.220077e-8	1.115886e-3	3.099682e-5
37	8074771	8019392	NM_004104	FASN	0.507741	3.231643e-8	1.119894e-3	3.026739e-5
38	8074771	8048234	NM_152862	ARPC2	-0.507608	3.262924e-8	1.130734e-3	2.975615e-5
39	8074771	7995448	NM_153261	TMEM188	-0.505956	3.675398e-8	1.273672e-3	3.265826e-5
40	8074771	7988753	NM_032802	SPPL2A	-0.505772	3.724444e-8	1.290669e-3	3.226672e-5
41	8074771	7997735	NM_005250	FOXL1	0.504731	4.013071e-8	1.390690e-3	3.391926e-5
42	8074771	8106534	NM_001114394	PAPD4	-0.504458	4.092437e-8	1.418193e-3	3.376651e-5
43	8074771	7900119	NM_005119	THRAP3	-0.504322	4.132337e-8	1.432020e-3	3.330280e-5
44	8074771	8001496	NM_007006	NUDT21	-0.504258	4.151462e-8	1.438648e-3	3.269654e-5
45	8074771	7930894	NM_005308	GRK5	-0.504244	4.155638e-8	1.440095e-3	3.200210e-5
46	8074771	8107613	NM_003100	SNX2	-0.503743	4.306790e-8	1.492475e-3	3.244511e-5
47	8074771	7945786	NM_005969	NAP1L4	-0.503720	4.314130e-8	1.495018e-3	3.180890e-5
48	8074771	8138670	NM_031243	HNRNPA2B1	-0.503643	4.337645e-8	1.503168e-3	3.131599e-5
49	8074771	8094704	NM_005339	UBE2K	-0.503586	4.355528e-8	1.509365e-3	3.080336e-5
50	8074771	8097373	BC034253	C4orf29	-0.503256	4.459280e-8	1.545319e-3	3.090638e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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