[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6297	7945162	NM_003658	BARX2		BARX homeobox 2

Fetching correlation data, please wait...
Getting list of correlations for id 6297.
Getting list of p-values for id 6297.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7945162	8074131	NM_001080420	SHANK3	0.841692	2.515865e-29	4.359239e-25	4.359239e-25
2	7945162	8137330	ENST00000356058		0.833931	2.402153e-28	4.162211e-24	2.081105e-24
3	7945162	7980523	NM_015859	GTF2A1	-0.833245	2.915796e-28	5.052200e-24	1.684067e-24
4	7945162	8032197	NM_152769	C19orf26	0.832320	3.781842e-28	6.552798e-24	1.638200e-24
5	7945162	8039524	NM_152600	ZNF579	0.830754	5.851873e-28	1.013954e-23	2.027908e-24
6	7945162	7911413	NM_003327	TNFRSF4	0.829781	7.658848e-28	1.327049e-23	2.211748e-24
7	7945162	8028407	NM_000540	RYR1	0.828928	9.681621e-28	1.677534e-23	2.396478e-24
8	7945162	7998015	NM_032451	SPIRE2	0.828653	1.043875e-27	1.808723e-23	2.260903e-24
9	7945162	8030181	NM_033378	CGB2	0.828222	1.174319e-27	2.034742e-23	2.260825e-24
10	7945162	8111216	ENST00000426411		0.827773	1.326910e-27	2.299136e-23	2.299136e-24
11	7945162	7991459	NM_020211	RGMA	0.827711	1.349653e-27	2.338544e-23	2.125949e-24
12	7945162	8131087	NM_001080461	UNCX	0.826917	1.673948e-27	2.900450e-23	2.417041e-24
13	7945162	8039362	NM_178837	C19orf51	0.826170	2.047799e-27	3.548222e-23	2.729402e-24
14	7945162	8027222	NM_153221	CILP2	0.825912	2.195159e-27	3.803552e-23	2.716823e-24
15	7945162	7927028	NM_153368	GJD4	0.825873	2.218012e-27	3.843150e-23	2.562100e-24
16	7945162	8151609	NM_172239	REXO1L1	0.825789	2.268674e-27	3.930931e-23	2.456832e-24
17	7945162	7968260	NM_145657	GSX1	0.824758	2.989669e-27	5.180199e-23	3.047176e-24
18	7945162	8067409	NM_005560	LAMA5	0.823930	3.726719e-27	6.457286e-23	3.587381e-24
19	7945162	7936882	NM_001146340	NKX1-2	0.822845	4.966065e-27	8.604700e-23	4.528790e-24
20	7945162	8076169	NM_014293	NPTXR	0.821994	6.210911e-27	1.076165e-22	5.380823e-24
21	7945162	8131056	NM_017781	CYP2W1	0.820503	9.167107e-27	1.588385e-22	7.563736e-24
22	7945162	7937560	NM_002457	MUC2	0.820107	1.015850e-26	1.760163e-22	8.000740e-24
23	7945162	8076007	NM_025045	BAIAP2L2	0.819339	1.239099e-26	2.146987e-22	9.334727e-24
24	7945162	8075126	NM_002430	MN1	0.818576	1.507643e-26	2.612294e-22	1.088456e-23
25	7945162	8062948	NM_014276	RBPJL	0.818513	1.532245e-26	2.654921e-22	1.061968e-23
26	7945162	8031084	NM_031895	CACNG8	0.817378	2.048553e-26	3.549528e-22	1.365203e-23
27	7945162	8153346	NM_023946	LYNX1	0.816438	2.601133e-26	4.506984e-22	1.669253e-23
28	7945162	8064242	NR_027686	NCRNA00176	0.816099	2.833920e-26	4.910334e-22	1.753691e-23
29	7945162	8013112	NM_016084	RASD1	0.815928	2.959703e-26	5.128277e-22	1.768372e-23
30	7945162	7931764	NM_018702	ADARB2	0.815913	2.970921e-26	5.147715e-22	1.715905e-23
31	7945162	8152477	NM_006265	RAD21	-0.813886	4.941697e-26	8.562478e-22	2.762090e-23
32	7945162	8121209	NM_005604	POU3F2	0.813251	5.787627e-26	1.002822e-21	3.133819e-23
33	7945162	7935983	NM_005029	PITX3	0.813137	5.954637e-26	1.031760e-21	3.126545e-23
34	7945162	7971820	NM_016075	VPS36	-0.811990	7.908510e-26	1.370307e-21	4.030316e-23
35	7945162	7944285	NM_001655	ARCN1	-0.811675	8.547143e-26	1.480964e-21	4.231324e-23
36	7945162	8005328	NM_016239	MYO15A	0.811476	8.977495e-26	1.555531e-21	4.320918e-23
37	7945162	8074063	NM_024866	ADM2	0.811332	9.300775e-26	1.611545e-21	4.355528e-23
38	7945162	7955112	NM_181788	H1FNT	0.811157	9.709917e-26	1.682437e-21	4.427467e-23
39	7945162	7912012	NM_007274	ACOT7	0.811050	9.967969e-26	1.727150e-21	4.428590e-23
40	7945162	7974771	NM_022495	C14orf135	-0.809713	1.381924e-25	2.394459e-21	5.986148e-23
41	7945162	8150928	NM_003580	NSMAF	-0.809328	1.517429e-25	2.629249e-21	6.412803e-23
42	7945162	8166500	NM_003410	ZFX	-0.809264	1.541316e-25	2.670638e-21	6.358662e-23
43	7945162	7980463	NM_012245	SNW1	-0.809214	1.559959e-25	2.702941e-21	6.285910e-23
44	7945162	8060604	NM_000915	OXT	0.808924	1.673671e-25	2.899971e-21	6.590842e-23
45	7945162	8000467	NM_001109763	GSG1L	0.808825	1.714437e-25	2.970605e-21	6.601344e-23
46	7945162	7934544	NM_144589	COMTD1	0.808795	1.726897e-25	2.992195e-21	6.504772e-23
47	7945162	8067521	NM_080473	GATA5	0.808472	1.867276e-25	3.235429e-21	6.883892e-23
48	7945162	7949015	NM_001144936	C11orf95	0.808357	1.919616e-25	3.326118e-21	6.929413e-23
49	7945162	7998668	NM_144603	NOXO1	0.807895	2.145903e-25	3.718207e-21	7.588177e-23
50	7945162	8091048	NR_023350	COPB2	-0.807423	2.403941e-25	4.165309e-21	8.330618e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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