[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4946	7915614	NM_003738	PTCH2		patched 2

Fetching correlation data, please wait...
Getting list of correlations for id 4946.
Getting list of p-values for id 4946.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.167 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7915614	8157804	NM_182487	OLFML2A	0.771005	6.591464e-22	1.142103e-17	1.142103e-17
2	7915614	8098848	NM_213613	SLC26A1	0.758867	6.714130e-21	1.163357e-16	5.816786e-17
3	7915614	8015206	NM_001123387	KRTAP2-1	0.758171	7.638551e-21	1.323532e-16	4.411773e-17
4	7915614	7945678	ENST00000391480		0.755139	1.332831e-20	2.309396e-16	5.773489e-17
5	7915614	8015208	NM_001123387	KRTAP2-1	0.747424	5.301187e-20	9.185367e-16	1.837073e-16
6	7915614	8049670	NM_002081	GPC1	0.741172	1.565545e-19	2.712619e-15	4.521032e-16
7	7915614	8153762	NM_017767	SLC39A4	0.740415	1.780867e-19	3.085708e-15	4.408155e-16
8	7915614	7901696	NM_174936	PCSK9	0.735201	4.278701e-19	7.413705e-15	9.267132e-16
9	7915614	8070786	NM_198688	KRTAP10-6	0.734930	4.475977e-19	7.755526e-15	8.617251e-16
10	7915614	8060126	NM_198998	AQP12A	0.730804	8.818621e-19	1.528002e-14	1.528002e-15
11	7915614	8037732	NM_001029861	NANOS2	0.730229	9.683210e-19	1.677810e-14	1.525282e-15
12	7915614	8131056	NM_017781	CYP2W1	0.721618	3.821285e-18	6.621141e-14	5.517617e-15
13	7915614	8019574	NM_033184	KRTAP2-4	0.720494	4.553705e-18	7.890204e-14	6.069388e-15
14	7915614	8015214	NM_033184	KRTAP2-4	0.720494	4.553705e-18	7.890204e-14	5.635860e-15
15	7915614	8065344	NM_021784	FOXA2	0.720191	4.773399e-18	8.270868e-14	5.513912e-15
16	7915614	7897753	NM_005957	MTHFR	0.718819	5.904505e-18	1.023074e-13	6.394210e-15
17	7915614	8123802	NM_201280	MUTED	-0.716696	8.184749e-18	1.418171e-13	8.342185e-15
18	7915614	7963020	NM_021044	DHH	0.716004	9.098603e-18	1.576515e-13	8.758416e-15
19	7915614	8070771	NM_198691	KRTAP10-1	0.713503	1.330284e-17	2.304983e-13	1.213149e-14
20	7915614	8049729	NM_198998	AQP12A	0.711453	1.810675e-17	3.137356e-13	1.568678e-14
21	7915614	8137183	NM_198455	SSPO	0.711201	1.880223e-17	3.257863e-13	1.551363e-14
22	7915614	8131069	NM_001039966	GPER	0.705412	4.423152e-17	7.663995e-13	3.483634e-14
23	7915614	8019576	NM_033184	KRTAP2-4	0.705336	4.472259e-17	7.749084e-13	3.369167e-14
24	7915614	8015210	NM_033184	KRTAP2-4	0.705336	4.472259e-17	7.749084e-13	3.228785e-14
25	7915614	7999916	NM_001002911	GPR139	0.704871	4.786140e-17	8.292944e-13	3.317178e-14
26	7915614	7942409	NM_176796	P2RY6	0.704711	4.898775e-17	8.488108e-13	3.264657e-14
27	7915614	8143110	NM_012450	SLC13A4	0.703677	5.693015e-17	9.864288e-13	3.653440e-14
28	7915614	7989680	NM_025049	PIF1	0.703423	5.906008e-17	1.023334e-12	3.654764e-14
29	7915614	8003939	NM_003963	TM4SF5	0.703409	5.918062e-17	1.025423e-12	3.535940e-14
30	7915614	7897066	NR_024445	LOC100128003	0.703283	6.027152e-17	1.044325e-12	3.481082e-14
31	7915614	8026265	NM_080864	RLN3	0.703255	6.051291e-17	1.048507e-12	3.382281e-14
32	7915614	8164562	NM_199350	C9orf50	0.702126	7.123097e-17	1.234219e-12	3.856934e-14
33	7915614	8167407	NM_181532	ERAS	0.701734	7.535554e-17	1.305685e-12	3.956623e-14
34	7915614	8010237	ENST00000340363		0.701188	8.150304e-17	1.412203e-12	4.153539e-14
35	7915614	7905020	NM_000798	DRD5	0.700107	9.515033e-17	1.648670e-12	4.710485e-14
36	7915614	8027222	NM_153221	CILP2	0.699932	9.754857e-17	1.690224e-12	4.695067e-14
37	7915614	8090485	NM_007354	C3orf27	0.699847	9.874583e-17	1.710969e-12	4.624241e-14
38	7915614	8137330	ENST00000356058		0.699385	1.054657e-16	1.827405e-12	4.808960e-14
39	7915614	8018754	NM_134268	CYGB	0.698936	1.124210e-16	1.947919e-12	4.994664e-14
40	7915614	8153346	NM_023946	LYNX1	0.698467	1.201600e-16	2.082012e-12	5.205031e-14
41	7915614	7955736	NM_012291	ESPL1	0.697885	1.304947e-16	2.261081e-12	5.514832e-14
42	7915614	8078435	NM_001039111	TRIM71	0.697734	1.333138e-16	2.309927e-12	5.499827e-14
43	7915614	8003656	NM_000934	SERPINF2	0.697297	1.418044e-16	2.457045e-12	5.714057e-14
44	7915614	8068883	NM_000394	CRYAA	0.697039	1.470530e-16	2.547987e-12	5.790879e-14
45	7915614	8045216	NM_207364	GPR148	0.696672	1.548512e-16	2.683107e-12	5.962459e-14
46	7915614	7984892	NM_021819	LMAN1L	0.696328	1.625429e-16	2.816381e-12	6.122567e-14
47	7915614	7922590	AK125993	NCRNA00083	0.696295	1.633052e-16	2.829589e-12	6.020403e-14
48	7915614	8131096	NM_001128636	ELFN1	0.695729	1.768158e-16	3.063687e-12	6.382681e-14
49	7915614	7897076	AK055432	MORN1	0.695713	1.772000e-16	3.070344e-12	6.266009e-14
50	7915614	8034940	NM_000435	NOTCH3	0.695699	1.775593e-16	3.076569e-12	6.153139e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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