[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3716	8102532	NM_001083	PDE5A		phosphodiesterase 5A, cGMP-specific

Fetching correlation data, please wait...
Getting list of correlations for id 3716.
Getting list of p-values for id 3716.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8102532	8135378	NM_002736	PRKAR2B	0.845093	9.004433e-30	1.560198e-25	1.560198e-25
2	8102532	8063716	NM_030773	TUBB1	0.844858	9.677415e-30	1.676806e-25	8.384028e-26
3	8102532	8115327	NM_003118	SPARC	0.820383	9.457443e-27	1.638691e-22	5.462304e-23
4	8102532	8120833	NM_031469	SH3BGRL2	0.818624	1.489243e-26	2.580411e-22	6.451028e-23
5	8102532	8123744	NM_000129	F13A1	0.811390	9.168840e-26	1.588685e-21	3.177370e-22
6	8102532	8021301	NM_004163	RAB27B	0.792467	7.513310e-24	1.301831e-19	2.169719e-20
7	8102532	7928444	NM_014000	VCL	0.781829	7.351604e-23	1.273812e-18	1.819732e-19
8	8102532	8054519	NM_004987	LIMS1	0.781710	7.536646e-23	1.305875e-18	1.632343e-19
9	8102532	8044333	NM_004987	LIMS1	0.781710	7.536646e-23	1.305875e-18	1.450972e-19
10	8102532	8007931	NM_000212	ITGB3	0.780615	9.459888e-23	1.639115e-18	1.639115e-19
11	8102532	8112274	NM_024930	ELOVL7	0.776976	1.995889e-22	3.458277e-18	3.143888e-19
12	8102532	7922200	NM_003005	SELP	0.776067	2.399678e-22	4.157921e-18	3.464934e-19
13	8102532	8149927	NM_001831	CLU	0.768154	1.151551e-21	1.995292e-17	1.534840e-18
14	8102532	8169617	NM_006667	PGRMC1	0.760869	4.623052e-21	8.010363e-17	5.721688e-18
15	8102532	7907370	NM_015569	DNM3	0.739133	2.213706e-19	3.835688e-15	2.557125e-16
16	8102532	8041383	NM_206943	LTBP1	0.738930	2.290736e-19	3.969158e-15	2.480724e-16
17	8102532	8057797	NM_004657	SDPR	0.735223	4.263105e-19	7.386682e-15	4.345107e-16
18	8102532	8044258	NM_004987	LIMS1	0.729332	1.119963e-18	1.940560e-14	1.078089e-15
19	8102532	8016044	NM_000419	ITGA2B	0.721701	3.772137e-18	6.535982e-14	3.439991e-15
20	8102532	8157650	NM_000962	PTGS1	0.718794	5.927256e-18	1.027016e-13	5.135078e-15
21	8102532	8111772	NM_001343	DAB2	0.709928	2.273430e-17	3.939172e-13	1.875796e-14
22	8102532	7982597	NM_003246	THBS1	0.704047	5.395402e-17	9.348614e-13	4.249370e-14
23	8102532	8016832	NM_012329	MMD	0.699168	1.087666e-16	1.884599e-12	8.193909e-14
24	8102532	7954997	NM_001025356	ANO6	0.687278	5.670313e-16	9.824952e-12	4.093730e-13
25	8102532	8059177	NM_006000	TUBA4A	0.681993	1.152038e-15	1.996136e-11	7.984545e-13
26	8102532	8097973	NM_000857	GUCY1B3	0.681706	1.196860e-15	2.073800e-11	7.976153e-13
27	8102532	8103695	NM_021647	MFAP3L	0.681132	1.291366e-15	2.237551e-11	8.287225e-13
28	8102532	8126269	NM_178174	TREML1	0.680059	1.487863e-15	2.578020e-11	9.207213e-13
29	8102532	8100966	NM_002619	PF4	0.672470	3.983977e-15	6.903037e-11	2.380358e-12
30	8102532	8134257	NM_004126	GNG11	0.671634	4.432454e-15	7.680113e-11	2.560038e-12
31	8102532	8132055	NM_152793	C7orf41	0.670811	4.921677e-15	8.527789e-11	2.750900e-12
32	8102532	8129458	NM_033515	ARHGAP18	0.667409	7.562215e-15	1.310305e-10	4.094703e-12
33	8102532	8004221	NM_000697	ALOX12	0.666011	9.006787e-15	1.560606e-10	4.729109e-12
34	8102532	7935180	NM_020992	PDLIM1	0.661614	1.551545e-14	2.688362e-10	7.906948e-12
35	8102532	7943293	NM_015036	ENDOD1	0.659300	2.058076e-14	3.566029e-10	1.018865e-11
36	8102532	8042283	NM_014181	HSPC159	0.656866	2.762960e-14	4.787380e-10	1.329828e-11
37	8102532	8117589	NM_003536	HIST1H3H	0.654969	3.469509e-14	6.011619e-10	1.624762e-11
38	8102532	7910229	NM_001024226	ARF1	0.647169	8.701556e-14	1.507719e-9	3.967680e-11
39	8102532	7944876	NM_006176	NRGN	0.642518	1.486718e-13	2.576036e-9	6.605222e-11
40	8102532	8110499	NM_025158	RUFY1	0.642207	1.540522e-13	2.669263e-9	6.673157e-11
41	8102532	7942204	NM_005231	CTTN	0.635920	3.130066e-13	5.423466e-9	1.322796e-10
42	8102532	8090162	NM_002213	ITGB5	0.634386	3.711984e-13	6.431755e-9	1.531370e-10
43	8102532	7932554	NM_020824	ARHGAP21	0.633441	4.121112e-13	7.140651e-9	1.660617e-10
44	8102532	8072577	NM_003405	YWHAH	0.632037	4.810783e-13	8.335644e-9	1.894465e-10
45	8102532	8050240	NM_002539	ODC1	0.630056	5.976696e-13	1.035582e-8	2.301294e-10
46	8102532	8069644	NM_000484	APP	0.621740	1.461296e-12	2.531988e-8	5.504322e-10
47	8102532	8063078	NM_001127695	CTSA	0.602559	1.042178e-11	1.805782e-7	3.842090e-9
48	8102532	8120251	NM_033480	FBXO9	0.601831	1.119963e-11	1.940559e-7	4.042832e-9
49	8102532	8143132	NM_001128619	LUZP6	0.600490	1.278272e-11	2.214861e-7	4.520125e-9
50	8102532	7940869	NM_178443	FERMT3	0.599898	1.354705e-11	2.347298e-7	4.694595e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation