[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1867	7957560	NM_003805	CRADD		CASP2 and RIPK1 domain containing adaptor with death domain

Fetching correlation data, please wait...
Getting list of correlations for id 1867.
Getting list of p-values for id 1867.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7957560	8159734	NM_000718	CACNA1B	0.490541	1.083756e-7	1.877824e-3	1.877824e-3
2	7957560	8137783	NM_001097620	TMEM184A	0.484953	1.583200e-7	2.743211e-3	1.371606e-3
3	7957560	7977105	NM_152307	TRMT61A	0.480029	2.198701e-7	3.809689e-3	1.269896e-3
4	7957560	8091588	NM_001038705	GPR149	0.475989	2.867785e-7	4.969010e-3	1.242253e-3
5	7957560	8097687	NM_004575	POU4F2	0.472587	3.577330e-7	6.198440e-3	1.239688e-3
6	7957560	7914516	NR_026850	MTMR9L	0.469787	4.283538e-7	7.422087e-3	1.237015e-3
7	7957560	8093053	NM_003234	TFRC	-0.469066	4.485857e-7	7.772645e-3	1.110378e-3
8	7957560	7962930	NM_015086	DDN	0.468713	4.588089e-7	7.949782e-3	9.937227e-4
9	7957560	7916384	NM_201546	CDCP2	0.464570	5.966902e-7	1.033885e-2	1.148761e-3
10	7957560	7955129	NM_001005203	OR8S1	0.464495	5.995282e-7	1.038803e-2	1.038803e-3
11	7957560	8170825	NM_001048181	OPN1MW2	0.463169	6.516194e-7	1.129061e-2	1.026419e-3
12	7957560	8006679	ENST00000411344		0.462348	6.860264e-7	1.188678e-2	9.905649e-4
13	7957560	7898184	NM_015849	CELA2B	0.452728	1.241029e-6	2.150331e-2	1.654101e-3
14	7957560	7951987	NM_001077263	TMPRSS13	0.451711	1.319932e-6	2.287046e-2	1.633604e-3
15	7957560	8072436	NM_001002837	INPP5J	0.450284	1.438664e-6	2.492774e-2	1.661849e-3
16	7957560	8115691	NM_003062	SLIT3	0.448266	1.623853e-6	2.813650e-2	1.758531e-3
17	7957560	8019331	NM_001145113	MYADML2	0.448246	1.625865e-6	2.817137e-2	1.657139e-3
18	7957560	7946006	ENST00000322059		0.446339	1.821728e-6	3.156508e-2	1.753616e-3
19	7957560	7948303	ENST00000319748		0.446071	1.850998e-6	3.207224e-2	1.688013e-3
20	7957560	8137131	AK056869		0.446037	1.854684e-6	3.213611e-2	1.606805e-3
21	7957560	7930311	NM_183239	GSTO2	0.445563	1.907605e-6	3.305307e-2	1.573956e-3
22	7957560	7998878	NM_022119	PRSS22	0.444761	2.000480e-6	3.466232e-2	1.575560e-3
23	7957560	8126436	NM_000322	PRPH2	0.444567	2.023497e-6	3.506113e-2	1.524397e-3
24	7957560	7959850	NM_007197	FZD10	0.444313	2.054192e-6	3.559298e-2	1.483041e-3
25	7957560	7984606	NM_014249	NR2E3	0.443986	2.094216e-6	3.628649e-2	1.451460e-3
26	7957560	7947129	NM_001029865	DBX1	0.443542	2.149772e-6	3.724910e-2	1.432658e-3
27	7957560	8074888	ENST00000412037		0.443123	2.203474e-6	3.817960e-2	1.414059e-3
28	7957560	8071745	NM_182520	C22orf15	0.440712	2.538147e-6	4.397848e-2	1.570660e-3
29	7957560	8164013	NM_018387	STRBP	-0.439904	2.660622e-6	4.610059e-2	1.589675e-3
30	7957560	7997976	AK303024	C16orf55	0.438766	2.842665e-6	4.925486e-2	1.641829e-3
31	7957560	7980828	NM_001080414	CCDC88C	-0.438681	2.856848e-6	4.950061e-2	1.596794e-3
32	7957560	8061529	NM_014012	REM1	0.436437	3.252711e-6	5.635972e-2	1.761241e-3
33	7957560	7898537	NM_002584	PAX7	0.436137	3.309293e-6	5.734012e-2	1.737580e-3
34	7957560	7959234	NM_000545	HNF1A	0.435536	3.425774e-6	5.935839e-2	1.745835e-3
35	7957560	8015706	NR_024461	LOC100190938	0.434839	3.565667e-6	6.178232e-2	1.765209e-3
36	7957560	8174005	NM_024917	TRMT2B	-0.433625	3.822145e-6	6.622630e-2	1.839620e-3
37	7957560	8038587	NM_032298	SYT3	0.432493	4.076932e-6	7.064100e-2	1.909216e-3
38	7957560	8144315	BC026965	ARHGEF10	0.432109	4.167000e-6	7.220161e-2	1.900042e-3
39	7957560	7915614	NM_003738	PTCH2	0.432097	4.169806e-6	7.225023e-2	1.852570e-3
40	7957560	8061572	NM_032609	COX4I2	0.431914	4.213425e-6	7.300601e-2	1.825150e-3
41	7957560	8004360	NM_001002914	KCTD11	0.431871	4.223683e-6	7.318376e-2	1.784970e-3
42	7957560	8174389	NM_033641	COL4A6	0.430902	4.462162e-6	7.731588e-2	1.840854e-3
43	7957560	8177931	NM_001010909	MUC21	0.430402	4.590339e-6	7.953681e-2	1.849693e-3
44	7957560	8157610	NM_032552	DAB2IP	0.430345	4.605197e-6	7.979425e-2	1.813506e-3
45	7957560	7945162	NM_003658	BARX2	0.430309	4.614531e-6	7.995598e-2	1.776800e-3
46	7957560	8031253	NR_003061	LILRP2	0.430287	4.620120e-6	8.005282e-2	1.740279e-3
47	7957560	8062796	NM_024034	GDAP1L1	0.430180	4.648214e-6	8.053960e-2	1.713608e-3
48	7957560	8012282	NR_024349	LOC284023	0.430074	4.676126e-6	8.102323e-2	1.687984e-3
49	7957560	7997245			0.430019	4.690688e-6	8.127554e-2	1.658685e-3
50	7957560	8035398	NM_002866	RAB3A	0.429604	4.801761e-6	8.320012e-2	1.664002e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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