[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3432	7930311	NM_183239	GSTO2		glutathione S-transferase omega 2

Fetching correlation data, please wait...
Getting list of correlations for id 3432.
Getting list of p-values for id 3432.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7930311	7991939	NM_145294	WDR90	0.703561	5.789398e-17	1.003129e-12	1.003129e-12
2	7930311	7898773	NM_020526	EPHA8	0.693851	2.298698e-16	3.982953e-12	1.991477e-12
3	7930311	8137783	NM_001097620	TMEM184A	0.693434	2.435736e-16	4.220400e-12	1.406800e-12
4	7930311	8053728	NM_000798	DRD5	0.693385	2.452574e-16	4.249575e-12	1.062394e-12
5	7930311	7996027	NM_002996	CX3CL1	0.686048	6.695968e-16	1.160210e-11	2.320421e-12
6	7930311	8016733	NM_016424	LUC7L3	0.683173	9.846437e-16	1.706092e-11	2.843487e-12
7	7930311	8010379	NM_024110	CARD14	0.681135	1.290779e-15	2.236534e-11	3.195048e-12
8	7930311	7927307	NM_001630	ANXA8L2	0.678845	1.745207e-15	3.023920e-11	3.779900e-12
9	7930311	8012309	NM_001139	ALOX12B	0.673464	3.507457e-15	6.077371e-11	6.752634e-12
10	7930311	7966690	NM_016569	TBX3	0.669036	6.162683e-15	1.067808e-10	1.067808e-11
11	7930311	7935983	NM_005029	PITX3	0.667591	7.391475e-15	1.280721e-10	1.164292e-11
12	7930311	8159036	NM_139025	ADAMTS13	0.666567	8.402754e-15	1.455945e-10	1.213288e-11
13	7930311	7976669	NM_001127258	HHIPL1	0.666345	8.639132e-15	1.496902e-10	1.151463e-11
14	7930311	7997801	NM_013278	IL17C	0.666266	8.724724e-15	1.511733e-10	1.079809e-11
15	7930311	7994052	NM_006043	HS3ST2	0.666000	9.018989e-15	1.562720e-10	1.041813e-11
16	7930311	8115691	NM_003062	SLIT3	0.661233	1.625583e-14	2.816648e-10	1.760405e-11
17	7930311	8131296	NR_015343	LOC389458	0.661025	1.667545e-14	2.889356e-10	1.699621e-11
18	7930311	8131056	NM_017781	CYP2W1	0.660916	1.689992e-14	2.928248e-10	1.626805e-11
19	7930311	8031084	NM_031895	CACNG8	0.660473	1.783995e-14	3.091128e-10	1.626910e-11
20	7930311	8164632	NM_032843	FIBCD1	0.660404	1.798943e-14	3.117029e-10	1.558515e-11
21	7930311	8110114	NM_006650	CPLX2	0.659847	1.925506e-14	3.336324e-10	1.588726e-11
22	7930311	8010071	NM_001088	AANAT	0.659600	1.984203e-14	3.438029e-10	1.562740e-11
23	7930311	8162920	NM_147180	PPP3R2	0.657947	2.425016e-14	4.201825e-10	1.826880e-11
24	7930311	8059748	NM_004826	ECEL1	0.657764	2.479128e-14	4.295585e-10	1.789827e-11
25	7930311	7950042	NM_012309	SHANK2	0.657628	2.520266e-14	4.366864e-10	1.746746e-11
26	7930311	7927367	NM_001040084	ANXA8	0.656801	2.784826e-14	4.825268e-10	1.855872e-11
27	7930311	8060325	NM_207469	DEFB132	0.655286	3.340294e-14	5.787728e-10	2.143603e-11
28	7930311	8071554	NM_152612	CCDC116	0.654384	3.720535e-14	6.446570e-10	2.302347e-11
29	7930311	8053142	NM_033046	RTKN	0.654330	3.744585e-14	6.488243e-10	2.237325e-11
30	7930311	8086183	NM_002078	GOLGA4	0.653931	3.927135e-14	6.804547e-10	2.268182e-11
31	7930311	8016168	NM_133373	PLCD3	0.653874	3.953805e-14	6.850758e-10	2.209922e-11
32	7930311	7910503	NM_001004342	TRIM67	0.653288	4.239644e-14	7.346030e-10	2.295634e-11
33	7930311	7948176	NM_033396	TNKS1BP1	0.653141	4.314091e-14	7.475025e-10	2.265159e-11
34	7930311	8174389	NM_033641	COL4A6	0.652450	4.682592e-14	8.113527e-10	2.386331e-11
35	7930311	8088425	NM_138805	FAM3D	0.652344	4.741962e-14	8.216397e-10	2.347542e-11
36	7930311	8010313	NM_178543	ENPP7	0.652328	4.751134e-14	8.232290e-10	2.286747e-11
37	7930311	8125234	NM_019105	TNXB	0.652170	4.840823e-14	8.387694e-10	2.266944e-11
38	7930311	7899284	NM_001013642	TRNP1	0.651748	5.088212e-14	8.816345e-10	2.320091e-11
39	7930311	8064384	NM_033129	SCRT2	0.651364	5.324325e-14	9.225457e-10	2.365502e-11
40	7930311	8054872	NM_014553	TFCP2L1	0.651018	5.545872e-14	9.609332e-10	2.402333e-11
41	7930311	8119435	NM_004828	NCR2	0.649500	6.629441e-14	1.148683e-9	2.801666e-11
42	7930311	7945742	NM_014555	TRPM5	0.649040	6.996118e-14	1.212217e-9	2.886232e-11
43	7930311	7984016	NM_207322	C2CD4A	0.648994	7.033832e-14	1.218752e-9	2.834307e-11
44	7930311	8035648	NM_001001524	TM6SF2	0.648805	7.191378e-14	1.246050e-9	2.831932e-11
45	7930311	8060134	NM_004321	KIF1A	0.648618	7.349853e-14	1.273509e-9	2.830020e-11
46	7930311	8121209	NM_005604	POU3F2	0.648502	7.450025e-14	1.290866e-9	2.806230e-11
47	7930311	7945688	NR_003512	INS-IGF2	0.648306	7.622394e-14	1.320732e-9	2.810069e-11
48	7930311	8038150	NM_182574	MAMSTR	0.648237	7.683956e-14	1.331399e-9	2.773748e-11
49	7930311	7934141	NM_022146	NPFFR1	0.647963	7.933615e-14	1.374658e-9	2.805423e-11
50	7930311	7937560	NM_002457	MUC2	0.647394	8.477191e-14	1.468843e-9	2.937686e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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