[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3120	7945742	NM_014555	TRPM5		transient receptor potential cation channel, subfamily M, member 5

Fetching correlation data, please wait...
Getting list of correlations for id 3120.
Getting list of p-values for id 3120.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7945742	8159670	NM_006647	NOXA1	0.726644	1.725817e-18	2.990323e-14	2.990323e-14
2	7945742	8086985	NM_000094	COL7A1	0.718261	6.435507e-18	1.115080e-13	5.575402e-14
3	7945742	8033487	NM_032447	FBN3	0.716509	8.422938e-18	1.459443e-13	4.864808e-14
4	7945742	7896761	NM_152486	SAMD11	0.716246	8.768796e-18	1.519369e-13	3.798423e-14
5	7945742	7998494	NM_001143980	CCDC154	0.715465	9.878269e-18	1.711608e-13	3.423215e-14
6	7945742	8174389	NM_033641	COL4A6	0.711556	1.782961e-17	3.089336e-13	5.148893e-14
7	7945742	8131056	NM_017781	CYP2W1	0.703669	5.699401e-17	9.875353e-13	1.410765e-13
8	7945742	7980152	NM_000428	LTBP2	0.703394	5.931315e-17	1.027719e-12	1.284649e-13
9	7945742	8032197	NM_152769	C19orf26	0.702816	6.448124e-17	1.117266e-12	1.241407e-13
10	7945742	8125568	NM_080680	COL11A2	0.702793	6.469848e-17	1.121031e-12	1.121031e-13
11	7945742	7911941	NM_015557	CHD5	0.701207	8.128467e-17	1.408419e-12	1.280381e-13
12	7945742	7958577	NM_032829	C12orf34	0.700346	9.194676e-17	1.593162e-12	1.327635e-13
13	7945742	8028407	NM_000540	RYR1	0.698440	1.206201e-16	2.089984e-12	1.607680e-13
14	7945742	7991893	BC016613	C16orf11	0.696935	1.492352e-16	2.585799e-12	1.846999e-13
15	7945742	7991939	NM_145294	WDR90	0.696672	1.548641e-16	2.683330e-12	1.788887e-13
16	7945742	7967969	NM_138284	IL17D	0.696337	1.623300e-16	2.812692e-12	1.757932e-13
17	7945742	8110382	NM_030567	PRR7	0.696183	1.658780e-16	2.874169e-12	1.690687e-13
18	7945742	8045332	ENST00000458407		0.696023	1.696652e-16	2.939789e-12	1.633216e-13
19	7945742	8157383	NM_032888	COL27A1	0.695849	1.738457e-16	3.012225e-12	1.585382e-13
20	7945742	8067242	ENST00000457363		0.694550	2.085116e-16	3.612881e-12	1.806441e-13
21	7945742	8038109	NM_017708	FAM83E	0.694154	2.203749e-16	3.818436e-12	1.818303e-13
22	7945742	8153101	NM_152888	COL22A1	0.693190	2.519822e-16	4.366096e-12	1.984589e-13
23	7945742	7996468	NM_024712	ELMO3	0.693100	2.551390e-16	4.420793e-12	1.922084e-13
24	7945742	7998629	ENST00000431136		0.692695	2.699069e-16	4.676677e-12	1.948615e-13
25	7945742	7955305	NM_001652	AQP6	0.691835	3.039768e-16	5.267006e-12	2.106802e-13
26	7945742	8153322	NM_015193	ARC	0.691656	3.115745e-16	5.398651e-12	2.076404e-13
27	7945742	8067671	NM_080823	SRMS	0.691624	3.129422e-16	5.422349e-12	2.008278e-13
28	7945742	8133704	NM_001110199	SRRM3	0.691579	3.149061e-16	5.456378e-12	1.948706e-13
29	7945742	7937560	NM_002457	MUC2	0.690555	3.625655e-16	6.282172e-12	2.166266e-13
30	7945742	7992140	ENST00000455256		0.689597	4.134616e-16	7.164049e-12	2.388016e-13
31	7945742	7952893	BC024764	IQSEC3	0.689065	4.446484e-16	7.704423e-12	2.485298e-13
32	7945742	7949843	NM_016366	CABP2	0.688984	4.495936e-16	7.790108e-12	2.434409e-13
33	7945742	7926871			0.688791	4.615862e-16	7.997904e-12	2.423607e-13
34	7945742	7992302	NM_020825	CRAMP1L	0.688744	4.645755e-16	8.049700e-12	2.367559e-13
35	7945742	7985920	NM_001039958	MESP2	0.688381	4.880819e-16	8.456996e-12	2.416285e-13
36	7945742	7966690	NM_016569	TBX3	0.688265	4.959125e-16	8.592676e-12	2.386854e-13
37	7945742	7995324			0.685543	7.168333e-16	1.242057e-11	3.356911e-13
38	7945742	7913547	NM_030761	WNT4	0.685438	7.269703e-16	1.259622e-11	3.314793e-13
39	7945742	7923347	NM_005558	LAD1	0.685393	7.314330e-16	1.267354e-11	3.249626e-13
40	7945742	7936144	NM_000494	COL17A1	0.685359	7.347975e-16	1.273184e-11	3.182959e-13
41	7945742	7995334			0.684901	7.814242e-16	1.353974e-11	3.302375e-13
42	7945742	7956229	NM_001135195	SLC39A5	0.684735	7.989809e-16	1.384394e-11	3.296177e-13
43	7945742	7992049	NM_207112	HAGHL	0.684299	8.471382e-16	1.467836e-11	3.413573e-13
44	7945742	8039524	NM_152600	ZNF579	0.683379	9.579508e-16	1.659841e-11	3.772367e-13
45	7945742	7934544	NM_144589	COMTD1	0.683171	9.849516e-16	1.706626e-11	3.792501e-13
46	7945742	8035408	NM_000923	PDE4C	0.682613	1.060942e-15	1.838294e-11	3.996292e-13
47	7945742	8155083	NM_001216	CA9	0.682267	1.110901e-15	1.924857e-11	4.095441e-13
48	7945742	8026407	NM_033025	SYDE1	0.682049	1.143541e-15	1.981413e-11	4.127945e-13
49	7945742	7941749	NM_177963	SYT12	0.681968	1.155880e-15	2.002794e-11	4.087334e-13
50	7945742	7897132	NM_022114	PRDM16	0.681829	1.177501e-15	2.040255e-11	4.080511e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation