[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2890	7900492	NM_004700	KCNQ4		potassium voltage-gated channel, KQT-like subfamily, member 4

Fetching correlation data, please wait...
Getting list of correlations for id 2890.
Getting list of p-values for id 2890.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7900492	8033462	NM_206833	CTXN1	0.760449	5.000992e-21	8.665219e-17	8.665219e-17
2	7900492	8024605	NM_021938	CELF5	0.754830	1.409996e-20	2.443099e-16	1.221550e-16
3	7900492	8121209	NM_005604	POU3F2	0.754585	1.474382e-20	2.554661e-16	8.515537e-17
4	7900492	8032088	NM_214710	PRSSL1	0.744699	8.531198e-20	1.478201e-15	3.695502e-16
5	7900492	8042537	NM_001692	ATP6V1B1	0.737039	3.148948e-19	5.456182e-15	1.091236e-15
6	7900492	8064014	NM_022082	SLC17A9	0.736413	3.496459e-19	6.058314e-15	1.009719e-15
7	7900492	8060134	NM_004321	KIF1A	0.729983	1.007864e-18	1.746326e-14	2.494751e-15
8	7900492	8030015	NM_012451	SYNGR4	0.729715	1.052594e-18	1.823829e-14	2.279787e-15
9	7900492	8133704	NM_001110199	SRRM3	0.728693	1.241820e-18	2.151702e-14	2.390780e-15
10	7900492	8079021	NM_001904	CTNNB1	-0.726871	1.664270e-18	2.883681e-14	2.883681e-15
11	7900492	7945688	NR_003512	INS-IGF2	0.726539	1.754982e-18	3.040857e-14	2.764415e-15
12	7900492	8137537	NM_001427	EN2	0.725872	1.952160e-18	3.382508e-14	2.818756e-15
13	7900492	8115691	NM_003062	SLIT3	0.722708	3.220660e-18	5.580437e-14	4.292644e-15
14	7900492	7896985	NM_080875	MIB2	0.722479	3.338938e-18	5.785378e-14	4.132413e-15
15	7900492	7942717	NM_000260	MYO7A	0.722417	3.371375e-18	5.841581e-14	3.894388e-15
16	7900492	8104268	NM_001003841	SLC6A19	0.722238	3.467312e-18	6.007811e-14	3.754882e-15
17	7900492	7912004	NM_207370	GPR153	0.722095	3.546389e-18	6.144829e-14	3.614605e-15
18	7900492	7977105	NM_152307	TRMT61A	0.719787	5.082602e-18	8.806625e-14	4.892569e-15
19	7900492	8100714	NM_001031732	YTHDC1	-0.718906	5.825753e-18	1.009428e-13	5.312780e-15
20	7900492	8064277	NM_004535	MYT1	0.716968	7.851430e-18	1.360417e-13	6.802086e-15
21	7900492	8034643	NM_001127221	CACNA1A	0.716768	8.094859e-18	1.402596e-13	6.679030e-15
22	7900492	7928291	NM_004273	CHST3	0.716197	8.834138e-18	1.530691e-13	6.957687e-15
23	7900492	7942123	NM_053056	CCND1	0.714150	1.206120e-17	2.089843e-13	9.086276e-15
24	7900492	8032037	NM_012435	SHC2	0.714146	1.206849e-17	2.091107e-13	8.712945e-15
25	7900492	8001449	NM_024336	IRX3	0.713853	1.261622e-17	2.186012e-13	8.744047e-15
26	7900492	7922108	NM_153832	GPR161	0.713299	1.371777e-17	2.376877e-13	9.141835e-15
27	7900492	7973580	NM_203402	FITM1	0.712916	1.453322e-17	2.518170e-13	9.326557e-15
28	7900492	7987701	NM_016642	SPTBN5	0.712217	1.614617e-17	2.797647e-13	9.991598e-15
29	7900492	8093826	NM_000683	ADRA2C	0.711583	1.775569e-17	3.076528e-13	1.060872e-14
30	7900492	7998724	NM_020764	CASKIN1	0.711341	1.841125e-17	3.190117e-13	1.063372e-14
31	7900492	7968260	NM_145657	GSX1	0.711311	1.849581e-17	3.204770e-13	1.033797e-14
32	7900492	7898809	NM_017449	EPHB2	0.708844	2.670294e-17	4.626818e-13	1.445881e-14
33	7900492	7897006	NM_006983	MMP23B	0.708121	2.971486e-17	5.148694e-13	1.560210e-14
34	7900492	7955184	NM_006262	PRPH	0.707611	3.203861e-17	5.551330e-13	1.632744e-14
35	7900492	8116033	NM_000505	F12	0.707226	3.390470e-17	5.874668e-13	1.678476e-14
36	7900492	7927307	NM_001630	ANXA8L2	0.706921	3.546170e-17	6.144449e-13	1.706792e-14
37	7900492	8033455	ENST00000327607		0.706905	3.554463e-17	6.158818e-13	1.664546e-14
38	7900492	7906284	NM_144702	C1orf92	0.706706	3.659645e-17	6.341067e-13	1.668702e-14
39	7900492	8151609	NM_172239	REXO1L1	0.706573	3.731770e-17	6.466038e-13	1.657958e-14
40	7900492	8064059	NM_020882	COL20A1	0.706111	3.993411e-17	6.919383e-13	1.729846e-14
41	7900492	8060609	ENST00000410721		0.705744	4.213643e-17	7.300979e-13	1.780727e-14
42	7900492	8165934	NM_001649	SHROOM2	0.705627	4.286214e-17	7.426722e-13	1.768267e-14
43	7900492	7935983	NM_005029	PITX3	0.705610	4.296823e-17	7.445105e-13	1.731420e-14
44	7900492	7991296	NM_198525	KIF7	0.705596	4.305905e-17	7.460842e-13	1.695646e-14
45	7900492	7934141	NM_022146	NPFFR1	0.705187	4.570978e-17	7.920133e-13	1.760030e-14
46	7900492	7908437	NM_024529	CDC73	-0.705033	4.674205e-17	8.098995e-13	1.760651e-14
47	7900492	8078412	NM_015442	CNOT10	-0.704999	4.697762e-17	8.139812e-13	1.731875e-14
48	7900492	8054092	NM_015348	TMEM131	-0.704915	4.755601e-17	8.240029e-13	1.716673e-14
49	7900492	8039362	NM_178837	C19orf51	0.704834	4.812317e-17	8.338302e-13	1.701694e-14
50	7900492	7997569	NM_139174	ADAD2	0.704580	4.993290e-17	8.651873e-13	1.730375e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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