[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
496	8113651	NM_004707	ATG12		ATG12 autophagy related 12 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 496.
Getting list of p-values for id 496.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8113651	8131871	NM_138771	CCDC126	0.673271	3.595337e-15	6.229640e-11	6.229640e-11
2	8113651	7969979	NM_032859	ABHD13	0.645777	1.022417e-13	1.771542e-9	8.857709e-10
3	8113651	7934278	NM_000917	P4HA1	0.624202	1.124582e-12	1.948564e-8	6.495214e-9
4	8113651	8123463	NM_018288	PHF10	0.619918	1.771363e-12	3.069241e-8	7.673103e-9
5	8113651	8080973	NM_174907	PPP4R2	0.617530	2.275050e-12	3.941979e-8	7.883957e-9
6	8113651	7923141	NM_144977	DENND1B	0.613604	3.417329e-12	5.921206e-8	9.868677e-9
7	8113651	8151401	NM_001001481	UBE2W	0.612775	3.721284e-12	6.447869e-8	9.211241e-9
8	8113651	8142307	NM_015723	PNPLA8	0.612499	3.828276e-12	6.633254e-8	8.291568e-9
9	8113651	8099364	NM_053042	ZNF518B	0.603234	9.747652e-12	1.688976e-7	1.876640e-8
10	8113651	8107421	NM_001284	AP3S1	0.598418	1.565841e-11	2.713133e-7	2.713133e-8
11	8113651	7976080	NM_003608	GPR65	0.597377	1.733025e-11	3.002813e-7	2.729830e-8
12	8113651	8135625	NM_006136	CAPZA2	0.595990	1.982708e-11	3.435438e-7	2.862865e-8
13	8113651	7927786	NM_001001330	REEP3	0.595180	2.144208e-11	3.715269e-7	2.857899e-8
14	8113651	7968670	NM_016617	UFM1	0.594272	2.340374e-11	4.055167e-7	2.896548e-8
15	8113651	8014066	NM_001003927	EVI2A	0.593571	2.503516e-11	4.337842e-7	2.891895e-8
16	8113651	8045619	NM_015630	EPC2	0.592509	2.771527e-11	4.802226e-7	3.001391e-8
17	8113651	8055645	NM_002552	ORC4L	0.591531	3.042814e-11	5.272284e-7	3.101343e-8
18	8113651	7995258	NM_003414	ZNF267	0.590774	3.270174e-11	5.666231e-7	3.147906e-8
19	8113651	8091432	NM_016094	COMMD2	0.590717	3.288022e-11	5.697156e-7	2.998503e-8
20	8113651	7936419	NM_018017	C10orf118	0.590612	3.320910e-11	5.754140e-7	2.877070e-8
21	8113651	7971661	hsa-mir-15a		0.590077	3.494047e-11	6.054135e-7	2.882921e-8
22	8113651	8138553	NM_032581	FAM126A	0.589396	3.726952e-11	6.457690e-7	2.935313e-8
23	8113651	8151549	NM_005536	IMPA1	0.588472	4.066931e-11	7.046772e-7	3.063814e-8
24	8113651	8154178	NM_004972	JAK2	0.588054	4.230544e-11	7.330264e-7	3.054276e-8
25	8113651	8176962	NM_005638	VAMP7	0.585357	5.447427e-11	9.438758e-7	3.775503e-8
26	8113651	8171041	NM_005638	VAMP7	0.585357	5.447427e-11	9.438758e-7	3.630291e-8
27	8113651	7957043	NM_006654	FRS2	0.583147	6.690685e-11	1.159295e-6	4.293685e-8
28	8113651	8056693	NM_024622	FASTKD1	0.583119	6.707874e-11	1.162273e-6	4.150976e-8
29	8113651	7962013	NM_016570	ERGIC2	0.582782	6.920390e-11	1.199096e-6	4.134814e-8
30	8113651	7909992	NM_015176	FBXO28	0.581798	7.579110e-11	1.313232e-6	4.377441e-8
31	8113651	8161575	ENST00000377395		0.580909	8.225160e-11	1.425173e-6	4.597334e-8
32	8113651	7929562	NM_014803	ZNF518A	0.579839	9.073900e-11	1.572235e-6	4.913233e-8
33	8113651	7943580	NM_003478	CUL5	0.579558	9.310380e-11	1.613210e-6	4.888514e-8
34	8113651	7923119	NM_194314	ZBTB41	0.577917	1.081536e-10	1.873978e-6	5.511699e-8
35	8113651	8067017	NM_003859	DPM1	0.577718	1.101305e-10	1.908230e-6	5.452087e-8
36	8113651	7916570	NM_145243	OMA1	0.577186	1.155773e-10	2.002607e-6	5.562798e-8
37	8113651	8055913	NM_017892	PRPF40A	0.576918	1.184249e-10	2.051949e-6	5.545808e-8
38	8113651	8105481	NM_152687	GAPT	0.576753	1.202178e-10	2.083014e-6	5.481616e-8
39	8113651	8081055	NM_014043	CHMP2B	0.576672	1.210975e-10	2.098256e-6	5.380143e-8
40	8113651	7984112	NM_016530	RAB8B	0.576325	1.249611e-10	2.165200e-6	5.413000e-8
41	8113651	8069574	NM_001100420	C21orf91	0.575985	1.288720e-10	2.232965e-6	5.446257e-8
42	8113651	7933619	NM_147156	SGMS1	0.575860	1.303375e-10	2.258359e-6	5.377044e-8
43	8113651	8113542	NM_005669	REEP5	0.575566	1.338464e-10	2.319157e-6	5.393389e-8
44	8113651	8041197	NM_001127401	YPEL5	0.574999	1.408666e-10	2.440795e-6	5.547262e-8
45	8113651	8142415	NM_152556	C7orf60	0.574896	1.421739e-10	2.463447e-6	5.474327e-8
46	8113651	8026007	NM_153358	ZNF791	0.574428	1.482942e-10	2.569494e-6	5.585857e-8
47	8113651	7938592	NM_032228	FAR1	0.574179	1.516535e-10	2.627700e-6	5.590851e-8
48	8113651	8081073	NM_173824	C3orf38	0.573905	1.554390e-10	2.693291e-6	5.611024e-8
49	8113651	8106303	NM_016218	POLK	0.572720	1.728537e-10	2.995035e-6	6.112317e-8
50	8113651	8038993	NM_006969	ZNF28	0.572269	1.799548e-10	3.118077e-6	6.236154e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation